Gene annotation
Transcriptome id Sobic.006G203600.1
Synonym Sb06g027480
Functional annotation EF hand family protein, putative, expressed
UniProt C5YF63
Pfam -
Panther DB PTHR11639 PTHR11639:SF62
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G64850 : Calcium-binding EF hand family protein
RAP-DB (Rice) LOC_Os04g51240.1 : EF hand family protein, putative, expressed
MaizeGDB (Corn) Zm00025a009930
Brachypodium KQJ84397
Barley HORVU2Hr1G101790.1
Wheat TraesCS2A02G435000 , TraesCS2B02G458100 , TraesCS2B02G458100 , TraesCS2D02G435000
Populus -


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cDNA sequences
Sobic.006G203600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G116600 E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed -
2 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein
3 Sobic.007G218600 phosphoribosyl transferase, putative, expressed K00761: upp, uracil phosphoribosyltransferase
4 Sobic.008G111800 mitochondrial import inner membrane translocase subunit Tim17, putative, expressed -
5 Sobic.005G049000 transcription elongation factor protein, putative, expressed -
6 Sobic.007G077532 - K08597: SENP8, NEDP1, sentrin-specific protease 8
7 Sobic.008G006000 expressed protein -
8 Sobic.007G192400 zinc ion binding protein, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
9 Sobic.001G424900 - -
10 Sobic.010G069500 zinc ion binding protein, putative, expressed -
11 Sobic.002G401700 TRAF-type zinc finger domain-containing protein 1, putative, expressed -
12 Sobic.007G032000 tryptophan synthase beta chain 1, putative, expressed K01696: tryptophan synthase beta chain
13 Sobic.004G141400 START domain containing protein, putative, expressed -
14 Sobic.003G199500 integral membrane protein, putative, expressed -
15 Sobic.003G202600 single myb histone, putative, expressed K09422: transcription factor MYB, plant
16 Sobic.009G140900 expressed protein -
17 Sobic.001G475300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
18 Sobic.001G287800 GTPase-activating protein, putative, expressed K12493: ADP-ribosylation factor GTPase-activating protein 2/3
19 Sobic.001G306800 expressed protein -
20 Sobic.004G004100 nucleic acid binding protein, putative, expressed -


Gene co-expression network
sample Sobic006G203600 Sobic006G203600 Sobic004G116600 Sobic004G116600 Sobic006G203600--Sobic004G116600 Sobic010G181600 Sobic010G181600 Sobic006G203600--Sobic010G181600 Sobic007G218600 Sobic007G218600 Sobic006G203600--Sobic007G218600 Sobic008G111800 Sobic008G111800 Sobic006G203600--Sobic008G111800 Sobic005G049000 Sobic005G049000 Sobic006G203600--Sobic005G049000 Sobic007G077532 Sobic007G077532 Sobic006G203600--Sobic007G077532 Sobic008G006000 Sobic008G006000 Sobic006G203600--Sobic008G006000 Sobic007G192400 Sobic007G192400 Sobic006G203600--Sobic007G192400 Sobic001G424900 Sobic001G424900 Sobic006G203600--Sobic001G424900 Sobic001G202266 Sobic001G202266 Sobic004G116600--Sobic001G202266 Sobic001G287800 Sobic001G287800 Sobic004G116600--Sobic001G287800 Sobic004G180900 Sobic004G180900 Sobic004G116600--Sobic004G180900 Sobic006G130200 Sobic006G130200 Sobic004G116600--Sobic006G130200 Sobic004G116600--Sobic005G049000 Sobic006G144000 Sobic006G144000 Sobic004G116600--Sobic006G144000 Sobic004G218300 Sobic004G218300 Sobic004G116600--Sobic004G218300 Sobic001G017200 Sobic001G017200 Sobic004G116600--Sobic001G017200 Sobic004G116600--Sobic007G192400 Sobic003G058500 Sobic003G058500 Sobic010G181600--Sobic003G058500 Sobic001G424800 Sobic001G424800 Sobic010G181600--Sobic001G424800 Sobic003G117800 Sobic003G117800 Sobic010G181600--Sobic003G117800 Sobic001G475300 Sobic001G475300 Sobic010G181600--Sobic001G475300 Sobic010G181600--Sobic008G006000 Sobic003G353700 Sobic003G353700 Sobic010G181600--Sobic003G353700 Sobic010G181600--Sobic007G218600 Sobic004G004100 Sobic004G004100 Sobic010G181600--Sobic004G004100 Sobic003G250400 Sobic003G250400 Sobic010G181600--Sobic003G250400 Sobic009G186700 Sobic009G186700 Sobic007G218600--Sobic009G186700 Sobic001G305900 Sobic001G305900 Sobic007G218600--Sobic001G305900 Sobic007G148400 Sobic007G148400 Sobic007G218600--Sobic007G148400 Sobic003G255700 Sobic003G255700 Sobic007G218600--Sobic003G255700 Sobic001G280500 Sobic001G280500 Sobic007G218600--Sobic001G280500 Sobic003G308300 Sobic003G308300 Sobic007G218600--Sobic003G308300 Sobic001G114200 Sobic001G114200 Sobic007G218600--Sobic001G114200 Sobic007G218600--Sobic010G181600 Sobic010G160300 Sobic010G160300 Sobic007G218600--Sobic010G160300 Sobic009G059400 Sobic009G059400 Sobic008G111800--Sobic009G059400 Sobic003G365700 Sobic003G365700 Sobic008G111800--Sobic003G365700 Sobic005G198200 Sobic005G198200 Sobic008G111800--Sobic005G198200 Sobic008G111800--Sobic007G218600 Sobic008G111800--Sobic007G148400 Sobic009G137900 Sobic009G137900 Sobic008G111800--Sobic009G137900 Sobic008G111800--Sobic009G186700 Sobic009G017200 Sobic009G017200 Sobic008G111800--Sobic009G017200 Sobic001G025700 Sobic001G025700 Sobic008G111800--Sobic001G025700 Sobic005G049000--Sobic004G116600 Sobic005G049000--Sobic007G192400 Sobic008G108500 Sobic008G108500 Sobic005G049000--Sobic008G108500 Sobic010G069500 Sobic010G069500 Sobic005G049000--Sobic010G069500 Sobic005G049000--Sobic008G006000 Sobic007G177500 Sobic007G177500 Sobic005G049000--Sobic007G177500 Sobic005G170000 Sobic005G170000 Sobic005G049000--Sobic005G170000 Sobic005G049000--Sobic006G203600 Sobic005G049000--Sobic006G144000 Sobic004G141400 Sobic004G141400 Sobic007G077532--Sobic004G141400 Sobic001G057400 Sobic001G057400 Sobic007G077532--Sobic001G057400 Sobic007G077532--Sobic007G192400 Sobic007G077532--Sobic004G004100 Sobic005G185500 Sobic005G185500 Sobic007G077532--Sobic005G185500 Sobic007G077532--Sobic010G181600 Sobic007G077532--Sobic003G353700 Sobic007G077532--Sobic008G006000 Sobic007G077532--Sobic003G117800 Sobic008G006000--Sobic010G181600 Sobic008G006000--Sobic007G192400 Sobic008G006000--Sobic003G353700 Sobic008G006000--Sobic004G141400 Sobic008G006000--Sobic007G077532 Sobic010G255900 Sobic010G255900 Sobic008G006000--Sobic010G255900 Sobic008G006000--Sobic005G185500 Sobic008G006000--Sobic003G117800 Sobic008G006000--Sobic001G280500 Sobic007G192400--Sobic003G353700 Sobic007G192400--Sobic008G006000 Sobic007G192400--Sobic007G077532 Sobic007G192400--Sobic010G181600 Sobic009G252300 Sobic009G252300 Sobic007G192400--Sobic009G252300 Sobic004G259300 Sobic004G259300 Sobic007G192400--Sobic004G259300 Sobic002G203600 Sobic002G203600 Sobic007G192400--Sobic002G203600 Sobic008G036600 Sobic008G036600 Sobic007G192400--Sobic008G036600 Sobic007G192400--Sobic004G141400 Sobic001G424900--Sobic009G059400 Sobic001G424900--Sobic007G218600 Sobic001G424900--Sobic003G058500 Sobic007G223100 Sobic007G223100 Sobic001G424900--Sobic007G223100 Sobic009G166600 Sobic009G166600 Sobic001G424900--Sobic009G166600 Sobic005G009100 Sobic005G009100 Sobic001G424900--Sobic005G009100 Sobic008G116700 Sobic008G116700 Sobic001G424900--Sobic008G116700 Sobic001G130200 Sobic001G130200 Sobic001G424900--Sobic001G130200 Sobic004G345400 Sobic004G345400 Sobic001G424900--Sobic004G345400
Octagon: transcription factors


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