Gene annotation
Transcriptome id Sobic.007G032000.1
Synonym TSB2, Sb07g002770
Functional annotation tryptophan synthase beta chain 1, putative, expressed
UniProt Q8W0T4
Pfam PF00291
Panther DB PTHR10314 PTHR10314:SF98
NCBI CDD -
KEGG Orthology K01696; tryptophan synthase beta chain
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G54810 : tryptophan synthase beta-subunit 1
RAP-DB (Rice) LOC_Os08g04180.1 : tryptophan synthase beta chain 1, putative, expressed
MaizeGDB (Corn) Zm00025a055281 , Zm00025a030163
Brachypodium KQJ94985
Barley HORVU7Hr1G073460.9 , HORVU7Hr1G073460.11 , HORVU7Hr1G073460.10 , HORVU7Hr1G073460.5 , HORVU7Hr1G073460.4 , HORVU7Hr1G073460.7 , HORVU7Hr1G073460.6 , HORVU7Hr1G073460.1 , HORVU7Hr1G073460.3 , HORVU7Hr1G073460.2 , HORVU7Hr1G073460.8
Wheat TraesCS7B02G208700 , TraesCS7A02G308600 , TraesCS7D02G305300
Populus -


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cDNA sequences
Sobic.007G032000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G302300 - -
2 Sobic.001G095000 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
3 Sobic.008G116700 expressed protein -
4 Sobic.006G109100 class I glutamine amidotransferase, putative, expressed K01658: anthranilate synthase component II
5 Sobic.004G302800 MSP domain containing protein, expressed -
6 Sobic.009G186700 TraB family protein, putative, expressed -
7 Sobic.005G145201 - K06630: 14-3-3 protein epsilon
8 Sobic.008G013200 expressed protein -
9 Sobic.003G198900 protein phosphatase 2C, putative, expressed -
10 Sobic.001G025700 protein phosphatase 2C, putative, expressed K01102: pyruvate dehydrogenase phosphatase
11 Sobic.003G291800 hexokinase, putative, expressed K00844: hexokinase
12 Sobic.009G156100 - -
13 Sobic.003G202600 single myb histone, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.010G105000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@caleosin related protein, putative, expressed K17991: peroxygenase
15 Sobic.007G004300 phosphate/phosphoenolpyruvate translocator-related protein, putative, expressed -
16 Sobic.007G076400 expressed protein -
17 Sobic.003G235100 HD domain containing protein 2, putative, expressed K07023: putative hydrolases of HD superfamily
18 Sobic.009G046900 N-acetylglucosaminyltransferase, putative, expressed -
19 Sobic.002G069000 galactosyltransferase family protein, putative, expressed -
20 Sobic.003G405600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@exostosin family domain containing protein, expressed -


Gene co-expression network
sample Sobic007G032000 Sobic007G032000 Sobic003G302300 Sobic003G302300 Sobic007G032000--Sobic003G302300 Sobic001G095000 Sobic001G095000 Sobic007G032000--Sobic001G095000 Sobic008G116700 Sobic008G116700 Sobic007G032000--Sobic008G116700 Sobic006G109100 Sobic006G109100 Sobic007G032000--Sobic006G109100 Sobic004G302800 Sobic004G302800 Sobic007G032000--Sobic004G302800 Sobic009G186700 Sobic009G186700 Sobic007G032000--Sobic009G186700 Sobic005G145201 Sobic005G145201 Sobic007G032000--Sobic005G145201 Sobic008G013200 Sobic008G013200 Sobic007G032000--Sobic008G013200 Sobic003G198900 Sobic003G198900 Sobic007G032000--Sobic003G198900 Sobic003G302300--Sobic007G032000 Sobic003G404100 Sobic003G404100 Sobic003G302300--Sobic003G404100 Sobic003G302300--Sobic008G013200 Sobic001G114200 Sobic001G114200 Sobic003G302300--Sobic001G114200 Sobic003G302300--Sobic009G186700 Sobic001G356100 Sobic001G356100 Sobic003G302300--Sobic001G356100 Sobic003G377500 Sobic003G377500 Sobic003G302300--Sobic003G377500 Sobic003G308300 Sobic003G308300 Sobic003G302300--Sobic003G308300 Sobic001G025700 Sobic001G025700 Sobic003G302300--Sobic001G025700 Sobic003G202600 Sobic003G202600 Sobic001G095000--Sobic003G202600 Sobic007G087000 Sobic007G087000 Sobic001G095000--Sobic007G087000 Sobic001G237600 Sobic001G237600 Sobic001G095000--Sobic001G237600 Sobic002G079000 Sobic002G079000 Sobic001G095000--Sobic002G079000 Sobic001G095000--Sobic007G032000 Sobic003G302200 Sobic003G302200 Sobic001G095000--Sobic003G302200 Sobic007G076400 Sobic007G076400 Sobic001G095000--Sobic007G076400 Sobic001G188400 Sobic001G188400 Sobic001G095000--Sobic001G188400 Sobic001G095000--Sobic008G116700 Sobic008G116700--Sobic007G087000 Sobic002G200000 Sobic002G200000 Sobic008G116700--Sobic002G200000 Sobic008G116700--Sobic001G114200 Sobic008G116700--Sobic002G079000 Sobic002G076500 Sobic002G076500 Sobic008G116700--Sobic002G076500 Sobic009G107300 Sobic009G107300 Sobic008G116700--Sobic009G107300 Sobic008G116700--Sobic007G076400 Sobic008G069300 Sobic008G069300 Sobic008G116700--Sobic008G069300 Sobic004G198600 Sobic004G198600 Sobic008G116700--Sobic004G198600 Sobic001G539400 Sobic001G539400 Sobic006G109100--Sobic001G539400 Sobic001G025500 Sobic001G025500 Sobic006G109100--Sobic001G025500 Sobic009G046900 Sobic009G046900 Sobic006G109100--Sobic009G046900 Sobic006G204400 Sobic006G204400 Sobic006G109100--Sobic006G204400 Sobic003G178800 Sobic003G178800 Sobic006G109100--Sobic003G178800 Sobic006G193400 Sobic006G193400 Sobic006G109100--Sobic006G193400 Sobic006G109100--Sobic005G145201 Sobic005G076800 Sobic005G076800 Sobic006G109100--Sobic005G076800 Sobic002G379800 Sobic002G379800 Sobic006G109100--Sobic002G379800 Sobic004G302800--Sobic003G198900 Sobic003G250400 Sobic003G250400 Sobic004G302800--Sobic003G250400 Sobic001G475300 Sobic001G475300 Sobic004G302800--Sobic001G475300 Sobic004G213300 Sobic004G213300 Sobic004G302800--Sobic004G213300 Sobic001G257800 Sobic001G257800 Sobic004G302800--Sobic001G257800 Sobic003G402800 Sobic003G402800 Sobic004G302800--Sobic003G402800 Sobic003G405600 Sobic003G405600 Sobic004G302800--Sobic003G405600 Sobic008G055500 Sobic008G055500 Sobic004G302800--Sobic008G055500 Sobic001G141400 Sobic001G141400 Sobic004G302800--Sobic001G141400 Sobic007G218600 Sobic007G218600 Sobic009G186700--Sobic007G218600 Sobic003G255700 Sobic003G255700 Sobic009G186700--Sobic003G255700 Sobic001G305900 Sobic001G305900 Sobic009G186700--Sobic001G305900 Sobic009G186700--Sobic003G308300 Sobic001G050500 Sobic001G050500 Sobic009G186700--Sobic001G050500 Sobic009G186700--Sobic001G114200 Sobic001G280500 Sobic001G280500 Sobic009G186700--Sobic001G280500 Sobic009G186700--Sobic008G013200 Sobic007G148400 Sobic007G148400 Sobic009G186700--Sobic007G148400 Sobic003G040700 Sobic003G040700 Sobic005G145201--Sobic003G040700 Sobic004G107100 Sobic004G107100 Sobic005G145201--Sobic004G107100 Sobic003G089100 Sobic003G089100 Sobic005G145201--Sobic003G089100 Sobic006G120900 Sobic006G120900 Sobic005G145201--Sobic006G120900 Sobic003G234500 Sobic003G234500 Sobic005G145201--Sobic003G234500 Sobic003G235100 Sobic003G235100 Sobic005G145201--Sobic003G235100 Sobic010G105000 Sobic010G105000 Sobic005G145201--Sobic010G105000 Sobic001G408400 Sobic001G408400 Sobic005G145201--Sobic001G408400 Sobic010G173300 Sobic010G173300 Sobic005G145201--Sobic010G173300 Sobic008G013200--Sobic003G308300 Sobic002G016000 Sobic002G016000 Sobic008G013200--Sobic002G016000 Sobic008G013200--Sobic003G255700 Sobic005G201200 Sobic005G201200 Sobic008G013200--Sobic005G201200 Sobic002G066700 Sobic002G066700 Sobic008G013200--Sobic002G066700 Sobic002G304500 Sobic002G304500 Sobic008G013200--Sobic002G304500 Sobic002G158300 Sobic002G158300 Sobic008G013200--Sobic002G158300 Sobic004G328100 Sobic004G328100 Sobic008G013200--Sobic004G328100 Sobic006G038700 Sobic006G038700 Sobic008G013200--Sobic006G038700 Sobic003G198900--Sobic003G250400 Sobic003G198900--Sobic004G302800 Sobic006G270000 Sobic006G270000 Sobic003G198900--Sobic006G270000 Sobic003G198900--Sobic001G257800 Sobic003G024400 Sobic003G024400 Sobic003G198900--Sobic003G024400 Sobic002G074800 Sobic002G074800 Sobic003G198900--Sobic002G074800 Sobic001G257200 Sobic001G257200 Sobic003G198900--Sobic001G257200 Sobic003G198900--Sobic008G069300 Sobic003G198900--Sobic004G213300
Octagon: transcription factors


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