Gene annotation
Transcriptome id Sobic.004G302800.1,Sobic.004G302800.2
Synonym PVA12, Sb04g033600
Functional annotation MSP domain containing protein, expressed
UniProt A0A194YSB1 , A0A194YSF9
Pfam PF00635
Panther DB PTHR10809 PTHR10809:SF53
NCBI CDD KOG0439; VAMP-associated protein involved in inositol metabolism
KEGG Orthology -
Gene Ontology GO:0005789; endoplasmic reticulum membrane


Orthologs (automatic annotation)
TAIR AT2G45140 : plant VAP homolog 12
RAP-DB (Rice) LOC_Os02g42940.1 : MSP domain containing protein, expressed
MaizeGDB (Corn) Zm00025a032138 , Zm00025a041681 , Zm00025a020975
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G302800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G198900 protein phosphatase 2C, putative, expressed -
2 Sobic.003G250400 zinc finger, C3HC4 type domain containing protein, expressed -
3 Sobic.001G475300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
4 Sobic.004G213300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
5 Sobic.001G257800 myosin, putative, expressed K10357: myosin V
6 Sobic.003G402800 DUF647 domain containing protein, putative, expressed -
7 Sobic.003G405600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@exostosin family domain containing protein, expressed -
8 Sobic.008G055500 Protein-tyrosine phosphatase domain containing protein, expressed -
9 Sobic.001G141400 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
10 Sobic.010G213500 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
11 Sobic.003G134300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX5 - F-box domain containing protein, expressed -
12 Sobic.002G307800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K01931: protein neuralized
13 Sobic.006G270000 expressed protein -
14 Sobic.003G403300 Sucrose phosphate synthase genes(PubMedID : 24456189)@"sucrose-phosphate synthase, predicted target of miR6223 or sbi-miR6223-3p expressed in the stems of sweet sorghum"(PubMedID : 26117170)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
15 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
16 Sobic.007G076400 expressed protein -
17 Sobic.007G172700 ECT5, putative, expressed -
18 Sobic.007G032000 tryptophan synthase beta chain 1, putative, expressed K01696: tryptophan synthase beta chain
19 Sobic.007G022600 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
20 Sobic.010G181600 WD domain, G-beta repeat domain containing protein, expressed K13137: STRAP, serine-threonine kinase receptor-associated protein


Gene co-expression network
sample Sobic004G302800 Sobic004G302800 Sobic003G198900 Sobic003G198900 Sobic004G302800--Sobic003G198900 Sobic003G250400 Sobic003G250400 Sobic004G302800--Sobic003G250400 Sobic001G475300 Sobic001G475300 Sobic004G302800--Sobic001G475300 Sobic004G213300 Sobic004G213300 Sobic004G302800--Sobic004G213300 Sobic001G257800 Sobic001G257800 Sobic004G302800--Sobic001G257800 Sobic003G402800 Sobic003G402800 Sobic004G302800--Sobic003G402800 Sobic003G405600 Sobic003G405600 Sobic004G302800--Sobic003G405600 Sobic008G055500 Sobic008G055500 Sobic004G302800--Sobic008G055500 Sobic001G141400 Sobic001G141400 Sobic004G302800--Sobic001G141400 Sobic003G198900--Sobic003G250400 Sobic003G198900--Sobic004G302800 Sobic006G270000 Sobic006G270000 Sobic003G198900--Sobic006G270000 Sobic003G198900--Sobic001G257800 Sobic003G024400 Sobic003G024400 Sobic003G198900--Sobic003G024400 Sobic002G074800 Sobic002G074800 Sobic003G198900--Sobic002G074800 Sobic001G257200 Sobic001G257200 Sobic003G198900--Sobic001G257200 Sobic008G069300 Sobic008G069300 Sobic003G198900--Sobic008G069300 Sobic003G198900--Sobic004G213300 Sobic003G250400--Sobic001G475300 Sobic003G250400--Sobic003G198900 Sobic003G250400--Sobic001G257800 Sobic003G428000 Sobic003G428000 Sobic003G250400--Sobic003G428000 Sobic004G082800 Sobic004G082800 Sobic003G250400--Sobic004G082800 Sobic010G024400 Sobic010G024400 Sobic003G250400--Sobic010G024400 Sobic010G181600 Sobic010G181600 Sobic003G250400--Sobic010G181600 Sobic003G117800 Sobic003G117800 Sobic003G250400--Sobic003G117800 Sobic003G250400--Sobic001G141400 Sobic001G475300--Sobic003G250400 Sobic001G475300--Sobic010G181600 Sobic001G475300--Sobic001G141400 Sobic001G475300--Sobic003G117800 Sobic007G172700 Sobic007G172700 Sobic001G475300--Sobic007G172700 Sobic002G355800 Sobic002G355800 Sobic001G475300--Sobic002G355800 Sobic003G058500 Sobic003G058500 Sobic001G475300--Sobic003G058500 Sobic008G152700 Sobic008G152700 Sobic001G475300--Sobic008G152700 Sobic001G475300--Sobic004G302800 Sobic004G213300--Sobic003G198900 Sobic004G213300--Sobic004G302800 Sobic004G213300--Sobic001G475300 Sobic004G213300--Sobic003G250400 Sobic003G134300 Sobic003G134300 Sobic004G213300--Sobic003G134300 Sobic004G198600 Sobic004G198600 Sobic004G213300--Sobic004G198600 Sobic003G243800 Sobic003G243800 Sobic004G213300--Sobic003G243800 Sobic004G213300--Sobic007G172700 Sobic004G213300--Sobic008G055500 Sobic001G257800--Sobic003G402800 Sobic003G385300 Sobic003G385300 Sobic001G257800--Sobic003G385300 Sobic010G134650 Sobic010G134650 Sobic001G257800--Sobic010G134650 Sobic004G064200 Sobic004G064200 Sobic001G257800--Sobic004G064200 Sobic001G257800--Sobic010G024400 Sobic004G176200 Sobic004G176200 Sobic001G257800--Sobic004G176200 Sobic001G257800--Sobic002G074800 Sobic004G261700 Sobic004G261700 Sobic001G257800--Sobic004G261700 Sobic001G257800--Sobic008G152700 Sobic003G402800--Sobic003G385300 Sobic003G402800--Sobic001G257800 Sobic003G402800--Sobic008G055500 Sobic003G402800--Sobic002G074800 Sobic005G048500 Sobic005G048500 Sobic003G402800--Sobic005G048500 Sobic005G185500 Sobic005G185500 Sobic003G402800--Sobic005G185500 Sobic003G402800--Sobic004G064200 Sobic009G046900 Sobic009G046900 Sobic003G402800--Sobic009G046900 Sobic001G149000 Sobic001G149000 Sobic003G402800--Sobic001G149000 Sobic003G405600--Sobic003G117800 Sobic007G077532 Sobic007G077532 Sobic003G405600--Sobic007G077532 Sobic003G405600--Sobic001G257800 Sobic001G114200 Sobic001G114200 Sobic003G405600--Sobic001G114200 Sobic006G060000 Sobic006G060000 Sobic003G405600--Sobic006G060000 Sobic007G030100 Sobic007G030100 Sobic003G405600--Sobic007G030100 Sobic010G213500 Sobic010G213500 Sobic003G405600--Sobic010G213500 Sobic003G405600--Sobic007G172700 Sobic003G405600--Sobic008G055500 Sobic008G055500--Sobic003G402800 Sobic008G055500--Sobic006G060000 Sobic004G350700 Sobic004G350700 Sobic008G055500--Sobic004G350700 Sobic008G055500--Sobic003G385300 Sobic008G055500--Sobic003G117800 Sobic008G055500--Sobic001G257800 Sobic008G055500--Sobic008G152700 Sobic008G055500--Sobic004G176200 Sobic001G501900 Sobic001G501900 Sobic008G055500--Sobic001G501900 Sobic001G141400--Sobic001G475300 Sobic009G252300 Sobic009G252300 Sobic001G141400--Sobic009G252300 Sobic001G141400--Sobic003G250400 Sobic009G194000 Sobic009G194000 Sobic001G141400--Sobic009G194000 Sobic003G190200 Sobic003G190200 Sobic001G141400--Sobic003G190200 Sobic001G141400--Sobic007G172700 Sobic001G490900 Sobic001G490900 Sobic001G141400--Sobic001G490900 Sobic002G200000 Sobic002G200000 Sobic001G141400--Sobic002G200000 Sobic003G039900 Sobic003G039900 Sobic001G141400--Sobic003G039900
Octagon: transcription factors


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