Gene annotation
Transcriptome id Sobic.003G134300.1
Synonym Sb03g011420
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsFBX5 - F-box domain containing protein, expressed
UniProt A0A1B6Q345
Pfam PF00646
Panther DB PTHR31482 PTHR31482:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G32560 : F-box family protein
RAP-DB (Rice) LOC_Os01g17390.1 : OsFBX5 - F-box domain containing protein, expressed
MaizeGDB (Corn) Zm00025a024172
Brachypodium KQK03959
Barley -
Wheat TraesCS3B02G220900 , TraesCS3B02G220900 , TraesCS3D02G195100 , TraesCS3A02G192000
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G134300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G302800 MSP domain containing protein, expressed -
2 Sobic.004G213300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EF hand family protein, putative, expressed -
3 Sobic.003G198900 protein phosphatase 2C, putative, expressed -
4 Sobic.002G098900 phospholipase D, putative, expressed K01115: phospholipase D1/2
5 Sobic.003G250400 zinc finger, C3HC4 type domain containing protein, expressed -
6 Sobic.003G403300 Sucrose phosphate synthase genes(PubMedID : 24456189)@"sucrose-phosphate synthase, predicted target of miR6223 or sbi-miR6223-3p expressed in the stems of sweet sorghum"(PubMedID : 26117170)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
7 Sobic.002G307800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein K01931: protein neuralized
8 Sobic.002G376600 paramyosin, putative, expressed -
9 Sobic.003G086300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cation efflux family protein, putative, expressed -
10 Sobic.001G014200 protein kinase domain containing protein, expressed K08829: male germ cell-associated kinase
11 Sobic.002G310900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTPase activating protein, putative, expressed -
12 Sobic.004G259300 Zinc finger C-x8-C-x5-C-x3-H type domain containing protein, expressed K15687: E3 ubiquitin-protein ligase makorin
13 Sobic.001G046200 - -
14 Sobic.004G082400 josephin, putative, expressed -
15 Sobic.002G151300 - -
16 Sobic.001G475300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11842: ubiquitin carboxyl-terminal hydrolase 12/46
17 Sobic.004G198600 cyclin G-associated kinase, putative, expressed K08853: AP2-associated kinase
18 Sobic.001G067700 amine oxidase-related, putative, expressed -
19 Sobic.010G240900 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
20 Sobic.002G408200 sec8 exocyst complex component specific domain containing protein, expressed K06111: EXOC4, exocyst complex component 4


Gene co-expression network
sample Sobic003G134300 Sobic003G134300 Sobic004G302800 Sobic004G302800 Sobic003G134300--Sobic004G302800 Sobic004G213300 Sobic004G213300 Sobic003G134300--Sobic004G213300 Sobic003G198900 Sobic003G198900 Sobic003G134300--Sobic003G198900 Sobic002G098900 Sobic002G098900 Sobic003G134300--Sobic002G098900 Sobic003G250400 Sobic003G250400 Sobic003G134300--Sobic003G250400 Sobic003G403300 Sobic003G403300 Sobic003G134300--Sobic003G403300 Sobic002G307800 Sobic002G307800 Sobic003G134300--Sobic002G307800 Sobic002G376600 Sobic002G376600 Sobic003G134300--Sobic002G376600 Sobic003G086300 Sobic003G086300 Sobic003G134300--Sobic003G086300 Sobic004G302800--Sobic003G198900 Sobic004G302800--Sobic003G250400 Sobic001G475300 Sobic001G475300 Sobic004G302800--Sobic001G475300 Sobic004G302800--Sobic004G213300 Sobic001G257800 Sobic001G257800 Sobic004G302800--Sobic001G257800 Sobic003G402800 Sobic003G402800 Sobic004G302800--Sobic003G402800 Sobic003G405600 Sobic003G405600 Sobic004G302800--Sobic003G405600 Sobic008G055500 Sobic008G055500 Sobic004G302800--Sobic008G055500 Sobic001G141400 Sobic001G141400 Sobic004G302800--Sobic001G141400 Sobic004G213300--Sobic003G198900 Sobic004G213300--Sobic004G302800 Sobic004G213300--Sobic001G475300 Sobic004G213300--Sobic003G250400 Sobic004G213300--Sobic003G134300 Sobic004G198600 Sobic004G198600 Sobic004G213300--Sobic004G198600 Sobic003G243800 Sobic003G243800 Sobic004G213300--Sobic003G243800 Sobic007G172700 Sobic007G172700 Sobic004G213300--Sobic007G172700 Sobic004G213300--Sobic008G055500 Sobic003G198900--Sobic003G250400 Sobic003G198900--Sobic004G302800 Sobic006G270000 Sobic006G270000 Sobic003G198900--Sobic006G270000 Sobic003G198900--Sobic001G257800 Sobic003G024400 Sobic003G024400 Sobic003G198900--Sobic003G024400 Sobic002G074800 Sobic002G074800 Sobic003G198900--Sobic002G074800 Sobic001G257200 Sobic001G257200 Sobic003G198900--Sobic001G257200 Sobic008G069300 Sobic008G069300 Sobic003G198900--Sobic008G069300 Sobic003G198900--Sobic004G213300 Sobic002G098900--Sobic003G403300 Sobic002G407000 Sobic002G407000 Sobic002G098900--Sobic002G407000 Sobic001G067700 Sobic001G067700 Sobic002G098900--Sobic001G067700 Sobic001G198400 Sobic001G198400 Sobic002G098900--Sobic001G198400 Sobic002G098900--Sobic002G376600 Sobic003G092800 Sobic003G092800 Sobic002G098900--Sobic003G092800 Sobic002G098900--Sobic008G069300 Sobic002G098900--Sobic003G198900 Sobic002G098900--Sobic003G134300 Sobic003G250400--Sobic001G475300 Sobic003G250400--Sobic003G198900 Sobic003G250400--Sobic001G257800 Sobic003G428000 Sobic003G428000 Sobic003G250400--Sobic003G428000 Sobic004G082800 Sobic004G082800 Sobic003G250400--Sobic004G082800 Sobic010G024400 Sobic010G024400 Sobic003G250400--Sobic010G024400 Sobic010G181600 Sobic010G181600 Sobic003G250400--Sobic010G181600 Sobic003G117800 Sobic003G117800 Sobic003G250400--Sobic003G117800 Sobic003G250400--Sobic001G141400 Sobic002G310900 Sobic002G310900 Sobic003G403300--Sobic002G310900 Sobic003G010800 Sobic003G010800 Sobic003G403300--Sobic003G010800 Sobic003G403300--Sobic002G307800 Sobic003G403300--Sobic002G098900 Sobic003G403300--Sobic002G407000 Sobic010G134000 Sobic010G134000 Sobic003G403300--Sobic010G134000 Sobic003G403300--Sobic001G067700 Sobic002G069000 Sobic002G069000 Sobic003G403300--Sobic002G069000 Sobic003G403300--Sobic003G198900 Sobic009G217400 Sobic009G217400 Sobic002G307800--Sobic009G217400 Sobic006G250800 Sobic006G250800 Sobic002G307800--Sobic006G250800 Sobic002G307800--Sobic002G310900 Sobic002G307800--Sobic003G403300 Sobic002G307800--Sobic003G010800 Sobic002G307800--Sobic003G198900 Sobic002G307800--Sobic004G302800 Sobic010G007300 Sobic010G007300 Sobic002G307800--Sobic010G007300 Sobic003G433400 Sobic003G433400 Sobic002G307800--Sobic003G433400 Sobic001G532600 Sobic001G532600 Sobic002G376600--Sobic001G532600 Sobic004G120100 Sobic004G120100 Sobic002G376600--Sobic004G120100 Sobic006G222600 Sobic006G222600 Sobic002G376600--Sobic006G222600 Sobic002G181600 Sobic002G181600 Sobic002G376600--Sobic002G181600 Sobic002G376600--Sobic001G198400 Sobic002G376600--Sobic002G098900 Sobic004G163800 Sobic004G163800 Sobic002G376600--Sobic004G163800 Sobic001G136800 Sobic001G136800 Sobic002G376600--Sobic001G136800 Sobic002G335000 Sobic002G335000 Sobic002G376600--Sobic002G335000 Sobic003G086300--Sobic003G243800 Sobic003G086300--Sobic009G217400 Sobic001G253300 Sobic001G253300 Sobic003G086300--Sobic001G253300 Sobic003G086300--Sobic004G213300 Sobic003G086300--Sobic003G250400 Sobic007G182000 Sobic007G182000 Sobic003G086300--Sobic007G182000 Sobic003G086300--Sobic002G307800 Sobic003G086300--Sobic001G475300 Sobic003G086300--Sobic006G250800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.