Gene annotation
Transcriptome id Sobic.002G098900.1
Synonym ATPLDDELTA, Sb02g008130, PLDDELTA
Functional annotation phospholipase D, putative, expressed
UniProt C5X2U3
Pfam PF00614 PF00168 PF12357
Panther DB PTHR18896 PTHR18896:SF71
NCBI CDD -
KEGG Orthology K01115; phospholipase D1/2
Gene Ontology GO:0003824; catalytic activity GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G35790 : phospholipase D delta
RAP-DB (Rice) LOC_Os07g15680.1 : phospholipase D, putative, expressed
MaizeGDB (Corn) Zm00025a013623
Brachypodium PNT76765 , KQK20211
Barley HORVU5Hr1G060030.30 , HORVU5Hr1G060030.31 , HORVU5Hr1G060030.32 , HORVU5Hr1G060030.33 , HORVU5Hr1G060030.34 , HORVU5Hr1G060030.35 , HORVU5Hr1G060030.36 , HORVU5Hr1G060030.37 , HORVU5Hr1G060030.38 , HORVU5Hr1G060030.39 , HORVU5Hr1G060030.17 , HORVU5Hr1G060030.41 , HORVU5Hr1G060030.40 , HORVU5Hr1G060030.43 , HORVU5Hr1G060030.42 , HORVU5Hr1G060030.45 , HORVU5Hr1G060030.44 , HORVU5Hr1G060030.47 , HORVU5Hr1G060030.46 , HORVU5Hr1G060030.49 , HORVU5Hr1G060030.48 , HORVU5Hr1G060030.18 , HORVU5Hr1G060030.19 , HORVU5Hr1G060030.12 , HORVU5Hr1G060030.13 , HORVU5Hr1G060030.10 , HORVU5Hr1G060030.11 , HORVU5Hr1G060030.16 , HORVU5Hr1G060030.14 , HORVU5Hr1G060030.15 , HORVU5Hr1G060030.1 , HORVU5Hr1G060030.2 , HORVU5Hr1G060030.3 , HORVU5Hr1G060030.4 , HORVU5Hr1G060030.5 , HORVU5Hr1G060030.6 , HORVU5Hr1G060030.7 , HORVU5Hr1G060030.8 , HORVU5Hr1G060030.9 , HORVU5Hr1G060030.23 , HORVU5Hr1G060030.22 , HORVU5Hr1G060030.21 , HORVU5Hr1G060030.20 , HORVU5Hr1G060030.27 , HORVU5Hr1G060030.26 , HORVU5Hr1G060030.25 , HORVU5Hr1G060030.24 , HORVU5Hr1G060030.29 , HORVU5Hr1G060030.28 , HORVU5Hr1G060030.52 , HORVU5Hr1G060030.50 , HORVU5Hr1G060030.51
Wheat TraesCS5B02G200600 , TraesCS5B02G200600 , TraesCS5B02G200600 , TraesCS5D02G208300 , TraesCS5D02G208300 , TraesCS5D02G208300 , TraesCS5A02G202000 , TraesCS5A02G202000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G403300 Sucrose phosphate synthase genes(PubMedID : 24456189)@"sucrose-phosphate synthase, predicted target of miR6223 or sbi-miR6223-3p expressed in the stems of sweet sorghum"(PubMedID : 26117170)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase
2 Sobic.002G407000 4-alpha-glucanotransferase, putative, expressed K00705: 4-alpha-glucanotransferase
3 Sobic.001G067700 amine oxidase-related, putative, expressed -
4 Sobic.001G198400 mutS domain V family protein, expressed -
5 Sobic.002G376600 paramyosin, putative, expressed -
6 Sobic.003G092800 white-brown complex homolog protein 7, putative, expressed -
7 Sobic.008G069300 - -
8 Sobic.003G198900 protein phosphatase 2C, putative, expressed -
9 Sobic.003G134300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX5 - F-box domain containing protein, expressed -
10 Sobic.005G023800 expressed protein -
11 Sobic.001G532600 pyridoxamine 5\'-phosphate oxidase family protein, putative, expressed -
12 Sobic.003G402000 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
13 Sobic.007G076400 expressed protein -
14 Sobic.009G107300 3\'-5\' exonuclease, putative, expressed -
15 Sobic.004G130932 - -
16 Sobic.001G528800 cell cycle control protein, putative, expressed -
17 Sobic.010G134000 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
18 Sobic.002G310900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTPase activating protein, putative, expressed -
19 Sobic.004G302800 MSP domain containing protein, expressed -
20 Sobic.003G291800 hexokinase, putative, expressed K00844: hexokinase


Gene co-expression network
sample Sobic002G098900 Sobic002G098900 Sobic003G403300 Sobic003G403300 Sobic002G098900--Sobic003G403300 Sobic002G407000 Sobic002G407000 Sobic002G098900--Sobic002G407000 Sobic001G067700 Sobic001G067700 Sobic002G098900--Sobic001G067700 Sobic001G198400 Sobic001G198400 Sobic002G098900--Sobic001G198400 Sobic002G376600 Sobic002G376600 Sobic002G098900--Sobic002G376600 Sobic003G092800 Sobic003G092800 Sobic002G098900--Sobic003G092800 Sobic008G069300 Sobic008G069300 Sobic002G098900--Sobic008G069300 Sobic003G198900 Sobic003G198900 Sobic002G098900--Sobic003G198900 Sobic003G134300 Sobic003G134300 Sobic002G098900--Sobic003G134300 Sobic002G310900 Sobic002G310900 Sobic003G403300--Sobic002G310900 Sobic003G010800 Sobic003G010800 Sobic003G403300--Sobic003G010800 Sobic002G307800 Sobic002G307800 Sobic003G403300--Sobic002G307800 Sobic003G403300--Sobic002G098900 Sobic003G403300--Sobic002G407000 Sobic010G134000 Sobic010G134000 Sobic003G403300--Sobic010G134000 Sobic003G403300--Sobic001G067700 Sobic002G069000 Sobic002G069000 Sobic003G403300--Sobic002G069000 Sobic003G403300--Sobic003G198900 Sobic001G201900 Sobic001G201900 Sobic002G407000--Sobic001G201900 Sobic007G113600 Sobic007G113600 Sobic002G407000--Sobic007G113600 Sobic001G178100 Sobic001G178100 Sobic002G407000--Sobic001G178100 Sobic001G411200 Sobic001G411200 Sobic002G407000--Sobic001G411200 Sobic002G407000--Sobic003G403300 Sobic002G407000--Sobic002G098900 Sobic002G407000--Sobic010G134000 Sobic002G407000--Sobic001G067700 Sobic002G407000--Sobic003G010800 Sobic001G067700--Sobic003G403300 Sobic001G067700--Sobic002G407000 Sobic001G067700--Sobic002G098900 Sobic001G067700--Sobic001G178100 Sobic008G018700 Sobic008G018700 Sobic001G067700--Sobic008G018700 Sobic001G067700--Sobic003G010800 Sobic002G181600 Sobic002G181600 Sobic001G067700--Sobic002G181600 Sobic001G067700--Sobic002G310900 Sobic005G111700 Sobic005G111700 Sobic001G067700--Sobic005G111700 Sobic006G038500 Sobic006G038500 Sobic001G198400--Sobic006G038500 Sobic004G079800 Sobic004G079800 Sobic001G198400--Sobic004G079800 Sobic003G234900 Sobic003G234900 Sobic001G198400--Sobic003G234900 Sobic004G120100 Sobic004G120100 Sobic001G198400--Sobic004G120100 Sobic002G347600 Sobic002G347600 Sobic001G198400--Sobic002G347600 Sobic004G163800 Sobic004G163800 Sobic001G198400--Sobic004G163800 Sobic001G528800 Sobic001G528800 Sobic001G198400--Sobic001G528800 Sobic006G216100 Sobic006G216100 Sobic001G198400--Sobic006G216100 Sobic002G042500 Sobic002G042500 Sobic001G198400--Sobic002G042500 Sobic001G532600 Sobic001G532600 Sobic002G376600--Sobic001G532600 Sobic002G376600--Sobic004G120100 Sobic006G222600 Sobic006G222600 Sobic002G376600--Sobic006G222600 Sobic002G376600--Sobic002G181600 Sobic002G376600--Sobic001G198400 Sobic002G376600--Sobic002G098900 Sobic002G376600--Sobic004G163800 Sobic001G136800 Sobic001G136800 Sobic002G376600--Sobic001G136800 Sobic002G335000 Sobic002G335000 Sobic002G376600--Sobic002G335000 Sobic009G217400 Sobic009G217400 Sobic003G092800--Sobic009G217400 Sobic003G433400 Sobic003G433400 Sobic003G092800--Sobic003G433400 Sobic002G084800 Sobic002G084800 Sobic003G092800--Sobic002G084800 Sobic003G092800--Sobic008G069300 Sobic007G022600 Sobic007G022600 Sobic003G092800--Sobic007G022600 Sobic003G291800 Sobic003G291800 Sobic003G092800--Sobic003G291800 Sobic009G026300 Sobic009G026300 Sobic003G092800--Sobic009G026300 Sobic007G076400 Sobic007G076400 Sobic003G092800--Sobic007G076400 Sobic006G250800 Sobic006G250800 Sobic003G092800--Sobic006G250800 Sobic009G046900 Sobic009G046900 Sobic008G069300--Sobic009G046900 Sobic002G074800 Sobic002G074800 Sobic008G069300--Sobic002G074800 Sobic003G428000 Sobic003G428000 Sobic008G069300--Sobic003G428000 Sobic009G148600 Sobic009G148600 Sobic008G069300--Sobic009G148600 Sobic010G109800 Sobic010G109800 Sobic008G069300--Sobic010G109800 Sobic009G229400 Sobic009G229400 Sobic008G069300--Sobic009G229400 Sobic008G069300--Sobic003G198900 Sobic009G156800 Sobic009G156800 Sobic008G069300--Sobic009G156800 Sobic006G270000 Sobic006G270000 Sobic008G069300--Sobic006G270000 Sobic003G250400 Sobic003G250400 Sobic003G198900--Sobic003G250400 Sobic004G302800 Sobic004G302800 Sobic003G198900--Sobic004G302800 Sobic003G198900--Sobic006G270000 Sobic001G257800 Sobic001G257800 Sobic003G198900--Sobic001G257800 Sobic003G024400 Sobic003G024400 Sobic003G198900--Sobic003G024400 Sobic003G198900--Sobic002G074800 Sobic001G257200 Sobic001G257200 Sobic003G198900--Sobic001G257200 Sobic003G198900--Sobic008G069300 Sobic004G213300 Sobic004G213300 Sobic003G198900--Sobic004G213300 Sobic003G134300--Sobic004G302800 Sobic003G134300--Sobic004G213300 Sobic003G134300--Sobic003G198900 Sobic003G134300--Sobic002G098900 Sobic003G134300--Sobic003G250400 Sobic003G134300--Sobic003G403300 Sobic003G134300--Sobic002G307800 Sobic003G134300--Sobic002G376600 Sobic003G086300 Sobic003G086300 Sobic003G134300--Sobic003G086300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.