Gene annotation
Transcriptome id Sobic.001G528800.5,Sobic.001G528800.6,Sobic.001G528800.3
Synonym ALIS1, Sb01g049200
Functional annotation cell cycle control protein, putative, expressed
UniProt A0A1B6QQX1 , A0A1B6QR03 , A0A1B6QQX6
Pfam PF03381
Panther DB PTHR10926 PTHR10926:SF26
NCBI CDD KOG2952; Cell cycle control protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT3G12740 : ALA-interacting subunit 1
RAP-DB (Rice) LOC_Os03g02830.1 : cell cycle control protein, putative, expressed
MaizeGDB (Corn) Zm00025a000281
Brachypodium KQK23950 , KQK05252 , KQK16998
Barley HORVU5Hr1G020720.4 , HORVU5Hr1G020720.5 , HORVU5Hr1G020720.6 , HORVU5Hr1G020720.7 , HORVU5Hr1G020720.1 , HORVU5Hr1G020720.2 , HORVU5Hr1G020720.3 , HORVU5Hr1G020720.8 , HORVU5Hr1G020720.9 , HORVU5Hr1G020720.14 , HORVU5Hr1G020720.15 , HORVU5Hr1G020720.12 , HORVU5Hr1G020720.13 , HORVU5Hr1G020720.10 , HORVU5Hr1G020720.11 , HORVU4Hr1G085300.2 , HORVU4Hr1G085300.3 , HORVU4Hr1G085300.1 , HORVU4Hr1G085300.6 , HORVU4Hr1G085300.7 , HORVU4Hr1G085300.4 , HORVU4Hr1G085300.5
Wheat TraesCS5A02G519200 , TraesCS4B02G350400 , TraesCS4D02G345100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G528800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G069000 expressed protein -
2 Sobic.001G198400 mutS domain V family protein, expressed -
3 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
4 Sobic.001G530900 expressed protein -
5 Sobic.010G002700 expressed protein -
6 Sobic.001G345100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
7 Sobic.004G143300 high mobility group, putative, expressed -
8 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
9 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
10 Sobic.005G118400 expressed protein -
11 Sobic.003G220100 - -
12 Sobic.010G243900 OsFBO9 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
13 Sobic.010G150100 expressed protein -
14 Sobic.007G136200 expressed protein -
15 Sobic.003G271400 chloride transporter, chloride channel family, putative, expressed -
16 Sobic.010G125500 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
17 Sobic.009G215500 transcription initiation factor IIB, putative, expressed K15196: BRF1, transcription factor IIIB 90 kDa subunit
18 Sobic.001G540600 expressed protein -
19 Sobic.004G120100 phosphoglucan, water dikinase, chloroplast precursor, putative, expressed K15535: phosphoglucan, water dikinase
20 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -


Gene co-expression network
sample Sobic001G528800 Sobic001G528800 Sobic004G069000 Sobic004G069000 Sobic001G528800--Sobic004G069000 Sobic001G198400 Sobic001G198400 Sobic001G528800--Sobic001G198400 Sobic001G378100 Sobic001G378100 Sobic001G528800--Sobic001G378100 Sobic001G530900 Sobic001G530900 Sobic001G528800--Sobic001G530900 Sobic010G002700 Sobic010G002700 Sobic001G528800--Sobic010G002700 Sobic001G345100 Sobic001G345100 Sobic001G528800--Sobic001G345100 Sobic004G143300 Sobic004G143300 Sobic001G528800--Sobic004G143300 Sobic008G033000 Sobic008G033000 Sobic001G528800--Sobic008G033000 Sobic004G042200 Sobic004G042200 Sobic001G528800--Sobic004G042200 Sobic003G271400 Sobic003G271400 Sobic004G069000--Sobic003G271400 Sobic004G069000--Sobic001G528800 Sobic004G069000--Sobic001G345100 Sobic004G069000--Sobic008G033000 Sobic005G206500 Sobic005G206500 Sobic004G069000--Sobic005G206500 Sobic010G085100 Sobic010G085100 Sobic004G069000--Sobic010G085100 Sobic007G136200 Sobic007G136200 Sobic004G069000--Sobic007G136200 Sobic001G536700 Sobic001G536700 Sobic004G069000--Sobic001G536700 Sobic004G069000--Sobic001G378100 Sobic006G038500 Sobic006G038500 Sobic001G198400--Sobic006G038500 Sobic004G079800 Sobic004G079800 Sobic001G198400--Sobic004G079800 Sobic003G234900 Sobic003G234900 Sobic001G198400--Sobic003G234900 Sobic004G120100 Sobic004G120100 Sobic001G198400--Sobic004G120100 Sobic002G347600 Sobic002G347600 Sobic001G198400--Sobic002G347600 Sobic004G163800 Sobic004G163800 Sobic001G198400--Sobic004G163800 Sobic001G198400--Sobic001G528800 Sobic006G216100 Sobic006G216100 Sobic001G198400--Sobic006G216100 Sobic002G042500 Sobic002G042500 Sobic001G198400--Sobic002G042500 Sobic003G073800 Sobic003G073800 Sobic001G378100--Sobic003G073800 Sobic001G217900 Sobic001G217900 Sobic001G378100--Sobic001G217900 Sobic001G504400 Sobic001G504400 Sobic001G378100--Sobic001G504400 Sobic001G077300 Sobic001G077300 Sobic001G378100--Sobic001G077300 Sobic001G540600 Sobic001G540600 Sobic001G378100--Sobic001G540600 Sobic001G378100--Sobic001G536700 Sobic006G232600 Sobic006G232600 Sobic001G378100--Sobic006G232600 Sobic009G170200 Sobic009G170200 Sobic001G378100--Sobic009G170200 Sobic001G258200 Sobic001G258200 Sobic001G378100--Sobic001G258200 Sobic001G530900--Sobic010G002700 Sobic009G215500 Sobic009G215500 Sobic001G530900--Sobic009G215500 Sobic001G530900--Sobic001G378100 Sobic007G185700 Sobic007G185700 Sobic001G530900--Sobic007G185700 Sobic005G118400 Sobic005G118400 Sobic001G530900--Sobic005G118400 Sobic005G084500 Sobic005G084500 Sobic001G530900--Sobic005G084500 Sobic003G332700 Sobic003G332700 Sobic001G530900--Sobic003G332700 Sobic001G465700 Sobic001G465700 Sobic001G530900--Sobic001G465700 Sobic003G217700 Sobic003G217700 Sobic001G530900--Sobic003G217700 Sobic003G017100 Sobic003G017100 Sobic010G002700--Sobic003G017100 Sobic001G169900 Sobic001G169900 Sobic010G002700--Sobic001G169900 Sobic010G002700--Sobic005G118400 Sobic010G043800 Sobic010G043800 Sobic010G002700--Sobic010G043800 Sobic010G002700--Sobic001G378100 Sobic010G002700--Sobic007G136200 Sobic003G276300 Sobic003G276300 Sobic010G002700--Sobic003G276300 Sobic001G198100 Sobic001G198100 Sobic010G002700--Sobic001G198100 Sobic010G002700--Sobic001G530900 Sobic001G345100--Sobic004G143300 Sobic007G058100 Sobic007G058100 Sobic001G345100--Sobic007G058100 Sobic001G345100--Sobic001G536700 Sobic008G129900 Sobic008G129900 Sobic001G345100--Sobic008G129900 Sobic010G231300 Sobic010G231300 Sobic001G345100--Sobic010G231300 Sobic001G345100--Sobic008G033000 Sobic006G235400 Sobic006G235400 Sobic001G345100--Sobic006G235400 Sobic001G263100 Sobic001G263100 Sobic001G345100--Sobic001G263100 Sobic001G345100--Sobic001G258200 Sobic004G143300--Sobic001G345100 Sobic004G143300--Sobic007G058100 Sobic004G143300--Sobic010G231300 Sobic004G143300--Sobic008G129900 Sobic004G143300--Sobic006G235400 Sobic004G143300--Sobic001G217900 Sobic006G161500 Sobic006G161500 Sobic004G143300--Sobic006G161500 Sobic004G143300--Sobic001G263100 Sobic004G128900 Sobic004G128900 Sobic004G143300--Sobic004G128900 Sobic003G185900 Sobic003G185900 Sobic008G033000--Sobic003G185900 Sobic008G033000--Sobic008G129900 Sobic008G033000--Sobic001G258200 Sobic008G033000--Sobic001G504400 Sobic008G033000--Sobic001G217900 Sobic010G125833 Sobic010G125833 Sobic008G033000--Sobic010G125833 Sobic002G206300 Sobic002G206300 Sobic008G033000--Sobic002G206300 Sobic004G215800 Sobic004G215800 Sobic008G033000--Sobic004G215800 Sobic009G038701 Sobic009G038701 Sobic008G033000--Sobic009G038701 Sobic009G038900 Sobic009G038900 Sobic004G042200--Sobic009G038900 Sobic004G042200--Sobic010G002700 Sobic003G191700 Sobic003G191700 Sobic004G042200--Sobic003G191700 Sobic006G050700 Sobic006G050700 Sobic004G042200--Sobic006G050700 Sobic003G220100 Sobic003G220100 Sobic004G042200--Sobic003G220100 Sobic003G155100 Sobic003G155100 Sobic004G042200--Sobic003G155100 Sobic010G243900 Sobic010G243900 Sobic004G042200--Sobic010G243900 Sobic005G106600 Sobic005G106600 Sobic004G042200--Sobic005G106600 Sobic006G133900 Sobic006G133900 Sobic004G042200--Sobic006G133900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.