Gene annotation
Transcriptome id Sobic.010G125500.1
Synonym Sb10g011070
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5Z949
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF25
NCBI CDD KOG0802; E3 ubiquitin ligase
KEGG Orthology K10601; SYVN1, E3 ubiquitin-protein ligase synoviolin
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G16090 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os06g19680.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a031425 , Zm00025a028598 , Zm00025a033503 , Zm00025a012995
Brachypodium KQK03741 , KQK03740 , KQK18516 , KQK18515 , PNT70311
Barley HORVU7Hr1G045350.8 , HORVU7Hr1G045350.9 , HORVU7Hr1G045350.6 , HORVU7Hr1G045350.7 , HORVU7Hr1G045350.4 , HORVU7Hr1G045350.5 , HORVU7Hr1G045350.2 , HORVU7Hr1G045350.3
Wheat TraesCS7A02G220000 , TraesCS7D02G222100 , TraesCS3A02G179300 , TraesCS3D02G184200 , TraesCS3D02G184200 , TraesCS3D02G184200 , TraesCS3D02G184200 , TraesCS7B02G127400
Populus -


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cDNA sequences
Sobic.010G125500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G136800 dual specificity protein phosphatase, putative, expressed -
2 Sobic.004G356700 oligopeptidase, putative, expressed K01414: oligopeptidase A
3 Sobic.004G244900 expressed protein -
4 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
5 Sobic.006G259800 inducer of CBF expression 2, putative, expressed -
6 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
7 Sobic.001G530900 expressed protein -
8 Sobic.001G457800 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K18663: activating signal cointegrator complex subunit 3
9 Sobic.009G135000 Highest expression level in leave(PubMedID : 27501690)@OsSPL9 - SBP-box gene family member, expressed -
10 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
11 Sobic.004G163800 neutral/alkaline invertase, putative, expressed -
12 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
13 Sobic.004G267800 nmrA-like family domain containing protein, expressed -
14 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
15 Sobic.004G134200 GTP binding protein, putative, expressed -
16 Sobic.002G091600 methyltransferase, putative, expressed -
17 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
18 Sobic.001G298900 agenet domain containing protein, putative, expressed -
19 Sobic.003G119600 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.003G311900 CK1_CaseinKinase_1a.3 - CK1 includes the casein kinase 1 kinases, expressed -


Gene co-expression network
sample Sobic010G125500 Sobic010G125500 Sobic001G136800 Sobic001G136800 Sobic010G125500--Sobic001G136800 Sobic004G356700 Sobic004G356700 Sobic010G125500--Sobic004G356700 Sobic004G244900 Sobic004G244900 Sobic010G125500--Sobic004G244900 Sobic006G219600 Sobic006G219600 Sobic010G125500--Sobic006G219600 Sobic006G259800 Sobic006G259800 Sobic010G125500--Sobic006G259800 Sobic003G155100 Sobic003G155100 Sobic010G125500--Sobic003G155100 Sobic001G530900 Sobic001G530900 Sobic010G125500--Sobic001G530900 Sobic001G457800 Sobic001G457800 Sobic010G125500--Sobic001G457800 Sobic009G135000 Sobic009G135000 Sobic010G125500--Sobic009G135000 Sobic003G354600 Sobic003G354600 Sobic001G136800--Sobic003G354600 Sobic005G199400 Sobic005G199400 Sobic001G136800--Sobic005G199400 Sobic001G136800--Sobic010G125500 Sobic003G264800 Sobic003G264800 Sobic001G136800--Sobic003G264800 Sobic001G136800--Sobic004G244900 Sobic009G201300 Sobic009G201300 Sobic001G136800--Sobic009G201300 Sobic005G106600 Sobic005G106600 Sobic001G136800--Sobic005G106600 Sobic003G311900 Sobic003G311900 Sobic001G136800--Sobic003G311900 Sobic002G091600 Sobic002G091600 Sobic001G136800--Sobic002G091600 Sobic008G001200 Sobic008G001200 Sobic004G356700--Sobic008G001200 Sobic001G194200 Sobic001G194200 Sobic004G356700--Sobic001G194200 Sobic002G146300 Sobic002G146300 Sobic004G356700--Sobic002G146300 Sobic004G001500 Sobic004G001500 Sobic004G356700--Sobic004G001500 Sobic009G256400 Sobic009G256400 Sobic004G356700--Sobic009G256400 Sobic004G356700--Sobic004G244900 Sobic004G356700--Sobic003G155100 Sobic004G356700--Sobic006G219600 Sobic004G334300 Sobic004G334300 Sobic004G356700--Sobic004G334300 Sobic004G244900--Sobic001G457800 Sobic004G244900--Sobic004G334300 Sobic003G119600 Sobic003G119600 Sobic004G244900--Sobic003G119600 Sobic004G244900--Sobic003G155100 Sobic004G244900--Sobic008G001200 Sobic004G244900--Sobic004G356700 Sobic004G244900--Sobic009G201300 Sobic002G275700 Sobic002G275700 Sobic004G244900--Sobic002G275700 Sobic003G168100 Sobic003G168100 Sobic004G244900--Sobic003G168100 Sobic006G219600--Sobic003G155100 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic001G133000 Sobic001G133000 Sobic006G219600--Sobic001G133000 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic001G374100 Sobic001G374100 Sobic006G259800--Sobic001G374100 Sobic009G038900 Sobic009G038900 Sobic006G259800--Sobic009G038900 Sobic001G244700 Sobic001G244700 Sobic006G259800--Sobic001G244700 Sobic006G259800--Sobic001G530900 Sobic006G259800--Sobic004G244900 Sobic004G042200 Sobic004G042200 Sobic006G259800--Sobic004G042200 Sobic008G044100 Sobic008G044100 Sobic006G259800--Sobic008G044100 Sobic001G519900 Sobic001G519900 Sobic006G259800--Sobic001G519900 Sobic006G259800--Sobic003G155100 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic010G206900 Sobic010G206900 Sobic003G155100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic003G155100--Sobic001G194200 Sobic010G010700 Sobic010G010700 Sobic003G155100--Sobic010G010700 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic010G002700 Sobic010G002700 Sobic001G530900--Sobic010G002700 Sobic009G215500 Sobic009G215500 Sobic001G530900--Sobic009G215500 Sobic001G378100 Sobic001G378100 Sobic001G530900--Sobic001G378100 Sobic007G185700 Sobic007G185700 Sobic001G530900--Sobic007G185700 Sobic005G118400 Sobic005G118400 Sobic001G530900--Sobic005G118400 Sobic001G530900--Sobic005G084500 Sobic003G332700 Sobic003G332700 Sobic001G530900--Sobic003G332700 Sobic001G465700 Sobic001G465700 Sobic001G530900--Sobic001G465700 Sobic003G217700 Sobic003G217700 Sobic001G530900--Sobic003G217700 Sobic001G457800--Sobic009G256400 Sobic001G457800--Sobic008G001200 Sobic001G370900 Sobic001G370900 Sobic001G457800--Sobic001G370900 Sobic003G166750 Sobic003G166750 Sobic001G457800--Sobic003G166750 Sobic001G457800--Sobic003G155100 Sobic001G457800--Sobic004G001500 Sobic001G457800--Sobic001G230000 Sobic003G043200 Sobic003G043200 Sobic001G457800--Sobic003G043200 Sobic001G457800--Sobic004G334300 Sobic009G135000--Sobic006G219600 Sobic009G135000--Sobic003G155100 Sobic009G135000--Sobic004G042200 Sobic009G135000--Sobic010G125500 Sobic007G198300 Sobic007G198300 Sobic009G135000--Sobic007G198300 Sobic009G135000--Sobic001G375100 Sobic009G135000--Sobic006G259800 Sobic009G135000--Sobic009G038900 Sobic009G135000--Sobic009G201300
Octagon: transcription factors


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