Gene annotation
Transcriptome id Sobic.009G135000.1,Sobic.009G135000.2
Synonym Sb09g020110, SbSBP16, ATSPL7, SPL7
Functional annotation Highest expression level in leave (PubMedID : 27501690)
OsSPL9 - SBP-box gene family member, expressed
UniProt A0A1Z5R2J6 , C5YXS3
Pfam PF03110
Panther DB PTHR31251 PTHR31251:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT5G18830 : squamosa promoter binding protein-like 7
RAP-DB (Rice) LOC_Os05g33810.1 : OsSPL9 - SBP-box gene family member, expressed
MaizeGDB (Corn) Zm00025a037471
Brachypodium KQK06300
Barley HORVU1Hr1G060770.10 , HORVU1Hr1G060770.3 , HORVU1Hr1G060770.9 , HORVU1Hr1G060770.8 , HORVU1Hr1G060770.6 , HORVU1Hr1G060770.5 , HORVU1Hr1G060770.4 , HORVU1Hr1G060770.2 , HORVU1Hr1G060770.1
Wheat TraesCS1A02G255300 , TraesCS1D02G254700 , TraesCS1B02G266100 , TraesCS1B02G266100
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G219600 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
2 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
3 Sobic.004G042200 OsFBO8 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
4 Sobic.010G125500 zinc finger, C3HC4 type domain containing protein, expressed K10601: SYVN1, E3 ubiquitin-protein ligase synoviolin
5 Sobic.007G198300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
6 Sobic.001G375100 AAA-type ATPase family protein, putative, expressed -
7 Sobic.006G259800 inducer of CBF expression 2, putative, expressed -
8 Sobic.009G038900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
9 Sobic.009G201300 - -
10 Sobic.003G198800 myosin, putative, expressed K10357: myosin V
11 Sobic.006G065100 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
12 Sobic.007G005400 chaperone protein dnaJ, putative, expressed K03686: molecular chaperone DnaJ
13 Sobic.005G084500 uncharacterized protein yqxC, putative, expressed K06442: 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase
14 Sobic.001G136800 dual specificity protein phosphatase, putative, expressed -
15 Sobic.002G124600 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
16 Sobic.002G117500 sterol 3-beta-glucosyltransferase, putative, expressed K05841: sterol 3beta-glucosyltransferase
17 Sobic.006G002300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.006G166100 GATA zinc finger domain containing protein, expressed -
19 Sobic.005G084800 expressed protein -
20 Sobic.010G205100 Sucrose phosphate synthase genes(PubMedID : 24456189)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase


Gene co-expression network
sample Sobic009G135000 Sobic009G135000 Sobic006G219600 Sobic006G219600 Sobic009G135000--Sobic006G219600 Sobic003G155100 Sobic003G155100 Sobic009G135000--Sobic003G155100 Sobic004G042200 Sobic004G042200 Sobic009G135000--Sobic004G042200 Sobic010G125500 Sobic010G125500 Sobic009G135000--Sobic010G125500 Sobic007G198300 Sobic007G198300 Sobic009G135000--Sobic007G198300 Sobic001G375100 Sobic001G375100 Sobic009G135000--Sobic001G375100 Sobic006G259800 Sobic006G259800 Sobic009G135000--Sobic006G259800 Sobic009G038900 Sobic009G038900 Sobic009G135000--Sobic009G038900 Sobic009G201300 Sobic009G201300 Sobic009G135000--Sobic009G201300 Sobic006G219600--Sobic003G155100 Sobic006G219600--Sobic009G201300 Sobic002G124600 Sobic002G124600 Sobic006G219600--Sobic002G124600 Sobic006G050700 Sobic006G050700 Sobic006G219600--Sobic006G050700 Sobic001G298900 Sobic001G298900 Sobic006G219600--Sobic001G298900 Sobic006G133900 Sobic006G133900 Sobic006G219600--Sobic006G133900 Sobic001G133000 Sobic001G133000 Sobic006G219600--Sobic001G133000 Sobic005G106600 Sobic005G106600 Sobic006G219600--Sobic005G106600 Sobic005G084500 Sobic005G084500 Sobic006G219600--Sobic005G084500 Sobic008G001200 Sobic008G001200 Sobic003G155100--Sobic008G001200 Sobic003G155100--Sobic006G219600 Sobic010G206900 Sobic010G206900 Sobic003G155100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic003G155100--Sobic001G230000 Sobic003G155100--Sobic001G375100 Sobic001G194200 Sobic001G194200 Sobic003G155100--Sobic001G194200 Sobic010G010700 Sobic010G010700 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic004G291900 Sobic004G291900 Sobic003G155100--Sobic004G291900 Sobic004G042200--Sobic009G038900 Sobic010G002700 Sobic010G002700 Sobic004G042200--Sobic010G002700 Sobic003G191700 Sobic003G191700 Sobic004G042200--Sobic003G191700 Sobic004G042200--Sobic006G050700 Sobic003G220100 Sobic003G220100 Sobic004G042200--Sobic003G220100 Sobic004G042200--Sobic003G155100 Sobic010G243900 Sobic010G243900 Sobic004G042200--Sobic010G243900 Sobic004G042200--Sobic005G106600 Sobic004G042200--Sobic006G133900 Sobic001G136800 Sobic001G136800 Sobic010G125500--Sobic001G136800 Sobic004G356700 Sobic004G356700 Sobic010G125500--Sobic004G356700 Sobic004G244900 Sobic004G244900 Sobic010G125500--Sobic004G244900 Sobic010G125500--Sobic006G219600 Sobic010G125500--Sobic006G259800 Sobic010G125500--Sobic003G155100 Sobic001G530900 Sobic001G530900 Sobic010G125500--Sobic001G530900 Sobic001G457800 Sobic001G457800 Sobic010G125500--Sobic001G457800 Sobic010G125500--Sobic009G135000 Sobic007G198300--Sobic001G375100 Sobic007G198300--Sobic003G155100 Sobic008G130100 Sobic008G130100 Sobic007G198300--Sobic008G130100 Sobic007G198300--Sobic003G191700 Sobic007G198300--Sobic009G038900 Sobic003G229300 Sobic003G229300 Sobic007G198300--Sobic003G229300 Sobic007G198300--Sobic006G219600 Sobic007G198300--Sobic006G133900 Sobic001G381600 Sobic001G381600 Sobic007G198300--Sobic001G381600 Sobic001G375100--Sobic003G155100 Sobic001G375100--Sobic008G001200 Sobic005G149200 Sobic005G149200 Sobic001G375100--Sobic005G149200 Sobic003G247500 Sobic003G247500 Sobic001G375100--Sobic003G247500 Sobic001G454500 Sobic001G454500 Sobic001G375100--Sobic001G454500 Sobic001G375100--Sobic010G010700 Sobic002G008900 Sobic002G008900 Sobic001G375100--Sobic002G008900 Sobic001G375100--Sobic007G198300 Sobic005G001000 Sobic005G001000 Sobic001G375100--Sobic005G001000 Sobic001G374100 Sobic001G374100 Sobic006G259800--Sobic001G374100 Sobic006G259800--Sobic009G038900 Sobic001G244700 Sobic001G244700 Sobic006G259800--Sobic001G244700 Sobic006G259800--Sobic001G530900 Sobic006G259800--Sobic004G244900 Sobic006G259800--Sobic004G042200 Sobic008G044100 Sobic008G044100 Sobic006G259800--Sobic008G044100 Sobic001G519900 Sobic001G519900 Sobic006G259800--Sobic001G519900 Sobic006G259800--Sobic003G155100 Sobic004G281800 Sobic004G281800 Sobic009G038900--Sobic004G281800 Sobic005G101200 Sobic005G101200 Sobic009G038900--Sobic005G101200 Sobic009G038900--Sobic005G106600 Sobic005G068700 Sobic005G068700 Sobic009G038900--Sobic005G068700 Sobic009G038900--Sobic004G042200 Sobic009G038900--Sobic003G220100 Sobic001G333800 Sobic001G333800 Sobic009G038900--Sobic001G333800 Sobic001G359300 Sobic001G359300 Sobic009G038900--Sobic001G359300 Sobic010G085100 Sobic010G085100 Sobic009G038900--Sobic010G085100 Sobic009G201300--Sobic006G219600 Sobic009G201300--Sobic003G155100 Sobic009G201300--Sobic006G050700 Sobic003G119600 Sobic003G119600 Sobic009G201300--Sobic003G119600 Sobic009G201300--Sobic004G244900 Sobic009G201300--Sobic001G133000 Sobic009G201300--Sobic008G001200 Sobic009G201300--Sobic001G457800 Sobic002G211800 Sobic002G211800 Sobic009G201300--Sobic002G211800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.