Gene annotation
Transcriptome id Sobic.004G069000.1
Synonym Sb04g005790
Functional annotation expressed protein
UniProt C5XWY8
Pfam -
Panther DB PTHR18937 PTHR18937:SF226
NCBI CDD KOG0978; E3 ubiquitin ligase involved in syntaxin degradation
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G32190 : Myosin heavy chain-related protein
RAP-DB (Rice) LOC_Os02g09340.1 : expressed protein
MaizeGDB (Corn) Zm00025a034721
Brachypodium -
Barley HORVU6Hr1G036020.3 , HORVU6Hr1G036020.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G271400 chloride transporter, chloride channel family, putative, expressed -
2 Sobic.001G528800 cell cycle control protein, putative, expressed -
3 Sobic.001G345100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding protein, putative, expressed K00921: PIKFYVE, 1-phosphatidylinositol-3-phosphate 5-kinase
4 Sobic.008G033000 CAAX amino terminal protease family protein, putative, expressed K07052: uncharacterized protein
5 Sobic.005G206500 sodium/calcium exchanger protein, putative, expressed K03452: magnesium/proton exchanger
6 Sobic.010G085100 geminivirus Rep-interacting motor protein, putative, expressed -
7 Sobic.007G136200 expressed protein -
8 Sobic.001G536700 expressed protein -
9 Sobic.001G378100 relA-SpoT like protein RSH1, putative, expressed -
10 Sobic.001G333500 chaperone protein clpB 1, putative, expressed K03695: ATP-dependent Clp protease ATP-binding subunit ClpB
11 Sobic.007G058100 light-mediated development protein DET1, putative, expressed K10571: de-etiolated-1
12 Sobic.001G136800 dual specificity protein phosphatase, putative, expressed -
13 Sobic.004G189800 ABC1 family domain containing protein, putative, expressed -
14 Sobic.005G101200 ELMO/CED-12 family protein, putative, expressed -
15 Sobic.005G106600 CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed K04371: ERK, mitogen-activated protein kinase 1/3
16 Sobic.004G337400 ELMO/CED-12 family protein, putative, expressed -
17 Sobic.004G120100 phosphoglucan, water dikinase, chloroplast precursor, putative, expressed K15535: phosphoglucan, water dikinase
18 Sobic.004G151800 sucrose phosphate phos- phatase(PubMedID : 26616172)@sucrose-phosphatase, putative, expressed -
19 Sobic.004G019800 MATE domain containing protein, expressed -
20 Sobic.001G258200 Ser/Thr protein phosphatase family protein, putative, expressed -


Gene co-expression network
sample Sobic004G069000 Sobic004G069000 Sobic003G271400 Sobic003G271400 Sobic004G069000--Sobic003G271400 Sobic001G528800 Sobic001G528800 Sobic004G069000--Sobic001G528800 Sobic001G345100 Sobic001G345100 Sobic004G069000--Sobic001G345100 Sobic008G033000 Sobic008G033000 Sobic004G069000--Sobic008G033000 Sobic005G206500 Sobic005G206500 Sobic004G069000--Sobic005G206500 Sobic010G085100 Sobic010G085100 Sobic004G069000--Sobic010G085100 Sobic007G136200 Sobic007G136200 Sobic004G069000--Sobic007G136200 Sobic001G536700 Sobic001G536700 Sobic004G069000--Sobic001G536700 Sobic001G378100 Sobic001G378100 Sobic004G069000--Sobic001G378100 Sobic007G227100 Sobic007G227100 Sobic003G271400--Sobic007G227100 Sobic004G312600 Sobic004G312600 Sobic003G271400--Sobic004G312600 Sobic003G271400--Sobic004G069000 Sobic003G003450 Sobic003G003450 Sobic003G271400--Sobic003G003450 Sobic004G337400 Sobic004G337400 Sobic003G271400--Sobic004G337400 Sobic004G127800 Sobic004G127800 Sobic003G271400--Sobic004G127800 Sobic008G038500 Sobic008G038500 Sobic003G271400--Sobic008G038500 Sobic004G151300 Sobic004G151300 Sobic003G271400--Sobic004G151300 Sobic010G150100 Sobic010G150100 Sobic003G271400--Sobic010G150100 Sobic001G528800--Sobic004G069000 Sobic001G198400 Sobic001G198400 Sobic001G528800--Sobic001G198400 Sobic001G528800--Sobic001G378100 Sobic001G530900 Sobic001G530900 Sobic001G528800--Sobic001G530900 Sobic010G002700 Sobic010G002700 Sobic001G528800--Sobic010G002700 Sobic001G528800--Sobic001G345100 Sobic004G143300 Sobic004G143300 Sobic001G528800--Sobic004G143300 Sobic001G528800--Sobic008G033000 Sobic004G042200 Sobic004G042200 Sobic001G528800--Sobic004G042200 Sobic001G345100--Sobic004G143300 Sobic007G058100 Sobic007G058100 Sobic001G345100--Sobic007G058100 Sobic001G345100--Sobic001G536700 Sobic008G129900 Sobic008G129900 Sobic001G345100--Sobic008G129900 Sobic010G231300 Sobic010G231300 Sobic001G345100--Sobic010G231300 Sobic001G345100--Sobic008G033000 Sobic006G235400 Sobic006G235400 Sobic001G345100--Sobic006G235400 Sobic001G263100 Sobic001G263100 Sobic001G345100--Sobic001G263100 Sobic001G258200 Sobic001G258200 Sobic001G345100--Sobic001G258200 Sobic003G185900 Sobic003G185900 Sobic008G033000--Sobic003G185900 Sobic008G033000--Sobic008G129900 Sobic008G033000--Sobic001G258200 Sobic001G504400 Sobic001G504400 Sobic008G033000--Sobic001G504400 Sobic001G217900 Sobic001G217900 Sobic008G033000--Sobic001G217900 Sobic010G125833 Sobic010G125833 Sobic008G033000--Sobic010G125833 Sobic002G206300 Sobic002G206300 Sobic008G033000--Sobic002G206300 Sobic004G215800 Sobic004G215800 Sobic008G033000--Sobic004G215800 Sobic009G038701 Sobic009G038701 Sobic008G033000--Sobic009G038701 Sobic005G206500--Sobic004G069000 Sobic010G249700 Sobic010G249700 Sobic005G206500--Sobic010G249700 Sobic008G064700 Sobic008G064700 Sobic005G206500--Sobic008G064700 Sobic005G206500--Sobic003G271400 Sobic005G101200 Sobic005G101200 Sobic005G206500--Sobic005G101200 Sobic003G028900 Sobic003G028900 Sobic005G206500--Sobic003G028900 Sobic004G281800 Sobic004G281800 Sobic005G206500--Sobic004G281800 Sobic003G021100 Sobic003G021100 Sobic005G206500--Sobic003G021100 Sobic010G275700 Sobic010G275700 Sobic005G206500--Sobic010G275700 Sobic010G085100--Sobic005G101200 Sobic010G085100--Sobic003G185900 Sobic007G105500 Sobic007G105500 Sobic010G085100--Sobic007G105500 Sobic002G404800 Sobic002G404800 Sobic010G085100--Sobic002G404800 Sobic010G085100--Sobic004G215800 Sobic008G140200 Sobic008G140200 Sobic010G085100--Sobic008G140200 Sobic003G036200 Sobic003G036200 Sobic010G085100--Sobic003G036200 Sobic010G085100--Sobic008G033000 Sobic004G154200 Sobic004G154200 Sobic010G085100--Sobic004G154200 Sobic006G158100 Sobic006G158100 Sobic007G136200--Sobic006G158100 Sobic010G043800 Sobic010G043800 Sobic007G136200--Sobic010G043800 Sobic007G136200--Sobic001G504400 Sobic007G136200--Sobic010G002700 Sobic007G103400 Sobic007G103400 Sobic007G136200--Sobic007G103400 Sobic001G169900 Sobic001G169900 Sobic007G136200--Sobic001G169900 Sobic007G136200--Sobic004G337400 Sobic007G108900 Sobic007G108900 Sobic007G136200--Sobic007G108900 Sobic007G136200--Sobic001G378100 Sobic001G536700--Sobic002G206300 Sobic001G536700--Sobic001G378100 Sobic001G180200 Sobic001G180200 Sobic001G536700--Sobic001G180200 Sobic003G094100 Sobic003G094100 Sobic001G536700--Sobic003G094100 Sobic003G341300 Sobic003G341300 Sobic001G536700--Sobic003G341300 Sobic001G536700--Sobic001G345100 Sobic001G077300 Sobic001G077300 Sobic001G536700--Sobic001G077300 Sobic001G536700--Sobic001G504400 Sobic007G135800 Sobic007G135800 Sobic001G536700--Sobic007G135800 Sobic003G073800 Sobic003G073800 Sobic001G378100--Sobic003G073800 Sobic001G378100--Sobic001G217900 Sobic001G378100--Sobic001G504400 Sobic001G378100--Sobic001G077300 Sobic001G540600 Sobic001G540600 Sobic001G378100--Sobic001G540600 Sobic001G378100--Sobic001G536700 Sobic006G232600 Sobic006G232600 Sobic001G378100--Sobic006G232600 Sobic009G170200 Sobic009G170200 Sobic001G378100--Sobic009G170200 Sobic001G378100--Sobic001G258200
Octagon: transcription factors


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