Gene annotation
Transcriptome id Sobic.001G198400.2,Sobic.001G198400.1
Synonym Sb01g017480
Functional annotation mutS domain V family protein, expressed
UniProt C5WWA7
Pfam PF00488
Panther DB PTHR11361 PTHR11361:SF81
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006298; mismatch repair GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT5G54090 : DNA mismatch repair protein MutS, type 2
RAP-DB (Rice) LOC_Os10g36530.1,LOC_Os10g36530.2 : mutS domain V family protein, expressed
MaizeGDB (Corn) Zm00025a017453
Brachypodium KQJ97440 , PNT67710 , PNT67709 , PNT67706 , PNT67707 , PNT67704 , PNT67705 , PNT67703 , KQJ97448 , KQJ97446 , KQJ97447 , KQJ97444 , KQJ97445 , KQJ97442 , KQJ97443 , PNT67708 , KQJ97441 , KQJ97439
Barley HORVU1Hr1G047640.18 , HORVU1Hr1G047640.19 , HORVU1Hr1G047640.16 , HORVU1Hr1G047640.17 , HORVU1Hr1G047640.15 , HORVU1Hr1G047640.12 , HORVU1Hr1G047640.13 , HORVU1Hr1G047640.10 , HORVU1Hr1G047640.11 , HORVU1Hr1G047640.63 , HORVU1Hr1G047640.62 , HORVU1Hr1G047640.61 , HORVU1Hr1G047640.60 , HORVU1Hr1G047640.66 , HORVU1Hr1G047640.65 , HORVU1Hr1G047640.64 , HORVU1Hr1G047640.4 , HORVU1Hr1G047640.7 , HORVU1Hr1G047640.1 , HORVU1Hr1G047640.49 , HORVU1Hr1G047640.44 , HORVU1Hr1G047640.47 , HORVU1Hr1G047640.41 , HORVU1Hr1G047640.40 , HORVU1Hr1G047640.43 , HORVU1Hr1G047640.9 , HORVU1Hr1G047640.52 , HORVU1Hr1G047640.53 , HORVU1Hr1G047640.51 , HORVU1Hr1G047640.56 , HORVU1Hr1G047640.57 , HORVU1Hr1G047640.54 , HORVU1Hr1G047640.55 , HORVU1Hr1G047640.58 , HORVU1Hr1G047640.59 , HORVU1Hr1G047640.5 , HORVU1Hr1G047640.6 , HORVU1Hr1G047640.2 , HORVU1Hr1G047640.3 , HORVU1Hr1G047640.27 , HORVU1Hr1G047640.26 , HORVU1Hr1G047640.25 , HORVU1Hr1G047640.24 , HORVU1Hr1G047640.23 , HORVU1Hr1G047640.22 , HORVU1Hr1G047640.21 , HORVU1Hr1G047640.29 , HORVU1Hr1G047640.28 , HORVU1Hr1G047640.34 , HORVU1Hr1G047640.35 , HORVU1Hr1G047640.36 , HORVU1Hr1G047640.37 , HORVU1Hr1G047640.30 , HORVU1Hr1G047640.31 , HORVU1Hr1G047640.32 , HORVU1Hr1G047640.33 , HORVU1Hr1G047640.38 , HORVU1Hr1G047640.39 , HORVU1Hr1G047640.42
Wheat TraesCS1B02G200700 , TraesCS1D02G178000 , TraesCS1A02G179700
Populus -


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cDNA sequences
Sobic.001G198400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G038500 tRNA-dihydrouridine synthase, putative, expressed K05539: tRNA-dihydrouridine synthase A
2 Sobic.004G079800 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
3 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
4 Sobic.004G120100 phosphoglucan, water dikinase, chloroplast precursor, putative, expressed K15535: phosphoglucan, water dikinase
5 Sobic.002G347600 pentatricopeptide containing protein, putative, expressed -
6 Sobic.004G163800 neutral/alkaline invertase, putative, expressed -
7 Sobic.001G528800 cell cycle control protein, putative, expressed -
8 Sobic.006G216100 expressed protein -
9 Sobic.002G042500 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
10 Sobic.009G092900 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
11 Sobic.004G034800 OsFBX440 - F-box domain containing protein, expressed -
12 Sobic.010G098200 peroxidase family protein, expressed -
13 Sobic.007G185700 CRS2-associated factor 1, chloroplast precursor, putative, expressed -
14 Sobic.010G243900 OsFBO9 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
15 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
16 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
17 Sobic.002G376600 paramyosin, putative, expressed -
18 Sobic.006G128300 DUF565 domain containing protein, putative, expressed -
19 Sobic.003G120300 NAD dependent epimerase/dehydratase family protein, putative, expressed -
20 Sobic.001G261573 - -


Gene co-expression network
sample Sobic001G198400 Sobic001G198400 Sobic006G038500 Sobic006G038500 Sobic001G198400--Sobic006G038500 Sobic004G079800 Sobic004G079800 Sobic001G198400--Sobic004G079800 Sobic003G234900 Sobic003G234900 Sobic001G198400--Sobic003G234900 Sobic004G120100 Sobic004G120100 Sobic001G198400--Sobic004G120100 Sobic002G347600 Sobic002G347600 Sobic001G198400--Sobic002G347600 Sobic004G163800 Sobic004G163800 Sobic001G198400--Sobic004G163800 Sobic001G528800 Sobic001G528800 Sobic001G198400--Sobic001G528800 Sobic006G216100 Sobic006G216100 Sobic001G198400--Sobic006G216100 Sobic002G042500 Sobic002G042500 Sobic001G198400--Sobic002G042500 Sobic006G038500--Sobic002G347600 Sobic001G465700 Sobic001G465700 Sobic006G038500--Sobic001G465700 Sobic006G038500--Sobic004G120100 Sobic001G126300 Sobic001G126300 Sobic006G038500--Sobic001G126300 Sobic003G141100 Sobic003G141100 Sobic006G038500--Sobic003G141100 Sobic006G128300 Sobic006G128300 Sobic006G038500--Sobic006G128300 Sobic001G516901 Sobic001G516901 Sobic006G038500--Sobic001G516901 Sobic003G232700 Sobic003G232700 Sobic006G038500--Sobic003G232700 Sobic003G160800 Sobic003G160800 Sobic006G038500--Sobic003G160800 Sobic004G079800--Sobic006G128300 Sobic001G495200 Sobic001G495200 Sobic004G079800--Sobic001G495200 Sobic009G092900 Sobic009G092900 Sobic004G079800--Sobic009G092900 Sobic001G025400 Sobic001G025400 Sobic004G079800--Sobic001G025400 Sobic003G150800 Sobic003G150800 Sobic004G079800--Sobic003G150800 Sobic004G079800--Sobic001G198400 Sobic002G274200 Sobic002G274200 Sobic004G079800--Sobic002G274200 Sobic004G079800--Sobic006G038500 Sobic003G085100 Sobic003G085100 Sobic004G079800--Sobic003G085100 Sobic003G234900--Sobic004G163800 Sobic007G185700 Sobic007G185700 Sobic003G234900--Sobic007G185700 Sobic003G067100 Sobic003G067100 Sobic003G234900--Sobic003G067100 Sobic005G231100 Sobic005G231100 Sobic003G234900--Sobic005G231100 Sobic002G431300 Sobic002G431300 Sobic003G234900--Sobic002G431300 Sobic002G043600 Sobic002G043600 Sobic003G234900--Sobic002G043600 Sobic003G234900--Sobic003G141100 Sobic002G343400 Sobic002G343400 Sobic003G234900--Sobic002G343400 Sobic003G234900--Sobic006G038500 Sobic004G120100--Sobic004G163800 Sobic007G136200 Sobic007G136200 Sobic004G120100--Sobic007G136200 Sobic004G120100--Sobic006G038500 Sobic004G120100--Sobic003G232700 Sobic004G120100--Sobic001G516901 Sobic005G084500 Sobic005G084500 Sobic004G120100--Sobic005G084500 Sobic004G120100--Sobic003G234900 Sobic004G238200 Sobic004G238200 Sobic004G120100--Sobic004G238200 Sobic004G120100--Sobic002G043600 Sobic002G347600--Sobic006G038500 Sobic003G301300 Sobic003G301300 Sobic002G347600--Sobic003G301300 Sobic004G336200 Sobic004G336200 Sobic002G347600--Sobic004G336200 Sobic008G091400 Sobic008G091400 Sobic002G347600--Sobic008G091400 Sobic002G347600--Sobic006G128300 Sobic003G247400 Sobic003G247400 Sobic002G347600--Sobic003G247400 Sobic002G347600--Sobic003G141100 Sobic004G328400 Sobic004G328400 Sobic002G347600--Sobic004G328400 Sobic009G121000 Sobic009G121000 Sobic002G347600--Sobic009G121000 Sobic004G163800--Sobic004G120100 Sobic004G163800--Sobic002G043600 Sobic004G163800--Sobic003G234900 Sobic004G163800--Sobic003G232700 Sobic004G163800--Sobic005G084500 Sobic004G163800--Sobic002G431300 Sobic004G163800--Sobic004G238200 Sobic001G327800 Sobic001G327800 Sobic004G163800--Sobic001G327800 Sobic004G163800--Sobic002G343400 Sobic004G069000 Sobic004G069000 Sobic001G528800--Sobic004G069000 Sobic001G528800--Sobic001G198400 Sobic001G378100 Sobic001G378100 Sobic001G528800--Sobic001G378100 Sobic001G530900 Sobic001G530900 Sobic001G528800--Sobic001G530900 Sobic010G002700 Sobic010G002700 Sobic001G528800--Sobic010G002700 Sobic001G345100 Sobic001G345100 Sobic001G528800--Sobic001G345100 Sobic004G143300 Sobic004G143300 Sobic001G528800--Sobic004G143300 Sobic008G033000 Sobic008G033000 Sobic001G528800--Sobic008G033000 Sobic004G042200 Sobic004G042200 Sobic001G528800--Sobic004G042200 Sobic004G034800 Sobic004G034800 Sobic006G216100--Sobic004G034800 Sobic002G042800 Sobic002G042800 Sobic006G216100--Sobic002G042800 Sobic003G168100 Sobic003G168100 Sobic006G216100--Sobic003G168100 Sobic001G455600 Sobic001G455600 Sobic006G216100--Sobic001G455600 Sobic006G252900 Sobic006G252900 Sobic006G216100--Sobic006G252900 Sobic009G132700 Sobic009G132700 Sobic006G216100--Sobic009G132700 Sobic007G031900 Sobic007G031900 Sobic006G216100--Sobic007G031900 Sobic003G398700 Sobic003G398700 Sobic006G216100--Sobic003G398700 Sobic004G244900 Sobic004G244900 Sobic006G216100--Sobic004G244900 Sobic001G037500 Sobic001G037500 Sobic002G042500--Sobic001G037500 Sobic002G042500--Sobic003G150800 Sobic005G111550 Sobic005G111550 Sobic002G042500--Sobic005G111550 Sobic004G206200 Sobic004G206200 Sobic002G042500--Sobic004G206200 Sobic002G042500--Sobic003G085100 Sobic002G042500--Sobic003G141100 Sobic002G296100 Sobic002G296100 Sobic002G042500--Sobic002G296100 Sobic002G042500--Sobic007G185700 Sobic002G042500--Sobic001G126300
Octagon: transcription factors


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