Gene annotation
Transcriptome id Sobic.009G092900.2,Sobic.009G092900.1
Synonym Sb09g010840
Functional annotation N-dimethylguanosine tRNA methyltransferase, putative, expressed
UniProt A0A1B6P7R6 , C5YVQ6
Pfam PF02005
Panther DB PTHR10631 PTHR10631:SF2
NCBI CDD -
KEGG Orthology K00555; TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
Gene Ontology GO:0008033; tRNA processing GO:0004809tRNA (guanine-N2-)-methyltransferase activity GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT3G56330 : N2,N2-dimethylguanosine tRNA methyltransferase
RAP-DB (Rice) LOC_Os05g25880.1 : N-dimethylguanosine tRNA methyltransferase, putative, expressed
MaizeGDB (Corn) Zm00025a043292
Brachypodium KQK06861 , KQK06860 , KQK06863 , KQK06862 , KQK06857 , KQK06858
Barley HORVU3Hr1G103630.2 , HORVU3Hr1G103630.3 , HORVU3Hr1G103630.4 , HORVU3Hr1G103630.5 , HORVU3Hr1G103630.6 , HORVU3Hr1G103630.7 , HORVU3Hr1G103630.8 , HORVU3Hr1G103630.9 , HORVU3Hr1G103630.23 , HORVU3Hr1G103630.22 , HORVU3Hr1G103630.21 , HORVU3Hr1G103630.20 , HORVU3Hr1G103630.24 , HORVU3Hr1G103630.18 , HORVU3Hr1G103630.19 , HORVU3Hr1G103630.12 , HORVU3Hr1G103630.13 , HORVU3Hr1G103630.10 , HORVU3Hr1G103630.11 , HORVU3Hr1G103630.16 , HORVU3Hr1G103630.17 , HORVU3Hr1G103630.14 , HORVU3Hr1G103630.15
Wheat TraesCS3D02G471100 , TraesCS3B02G519600 , TraesCS3A02G476600 , TraesCS3A02G476600 , TraesCS3B02G519600 , TraesCS3D02G471100
Populus -


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cDNA sequences
Sobic.009G092900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
2 Sobic.008G090900 expressed protein -
3 Sobic.003G045300 cobalt ion transporter, putative, expressed -
4 Sobic.002G181132 - -
5 Sobic.005G117300 ABC transporter, ATP-binding protein, putative, expressed -
6 Sobic.004G079800 outer membrane protein, OMP85 family protein, expressed K07277: SAM50, TOB55, outer membrane protein insertion porin family
7 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
9 Sobic.001G346600 kinesin heavy chain isolog, putative, expressed -
10 Sobic.003G067100 aspartyl-tRNA synthetase, putative, expressed K01876: aspartyl-tRNA synthetase
11 Sobic.009G085200 glyoxalase family protein, putative, expressed K01759: GLO1, lactoylglutathione lyase
12 Sobic.001G495200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
13 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
14 Sobic.001G025800 pentatricopeptide, putative, expressed -
15 Sobic.004G144400 riboflavin biosynthesis protein ribD, putative, expressed K11752: diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
16 Sobic.003G234900 radical SAM enzyme, putative, expressed K06941: 23S rRNA (adenine2503-C2)-methyltransferase
17 Sobic.003G085000 sufB/sufD domain containing protein, putative, expressed K09015: Fe-S cluster assembly protein SufD
18 Sobic.001G003900 pentatricopeptide, putative, expressed -
19 Sobic.006G166500 expressed protein -
20 Sobic.001G198400 mutS domain V family protein, expressed -


Gene co-expression network
sample Sobic009G092900 Sobic009G092900 Sobic004G003900 Sobic004G003900 Sobic009G092900--Sobic004G003900 Sobic008G090900 Sobic008G090900 Sobic009G092900--Sobic008G090900 Sobic003G045300 Sobic003G045300 Sobic009G092900--Sobic003G045300 Sobic002G181132 Sobic002G181132 Sobic009G092900--Sobic002G181132 Sobic005G117300 Sobic005G117300 Sobic009G092900--Sobic005G117300 Sobic004G079800 Sobic004G079800 Sobic009G092900--Sobic004G079800 Sobic003G128400 Sobic003G128400 Sobic009G092900--Sobic003G128400 Sobic001G375000 Sobic001G375000 Sobic009G092900--Sobic001G375000 Sobic001G346600 Sobic001G346600 Sobic009G092900--Sobic001G346600 Sobic004G003900--Sobic001G375000 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic004G003900--Sobic009G092900 Sobic004G003900--Sobic002G181132 Sobic004G003900--Sobic003G045300 Sobic003G162800 Sobic003G162800 Sobic004G003900--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic004G003900--Sobic006G088000 Sobic001G003900 Sobic001G003900 Sobic004G003900--Sobic001G003900 Sobic008G090900--Sobic004G003900 Sobic008G090900--Sobic009G092900 Sobic008G090900--Sobic002G181132 Sobic001G382800 Sobic001G382800 Sobic008G090900--Sobic001G382800 Sobic008G067100 Sobic008G067100 Sobic008G090900--Sobic008G067100 Sobic008G090900--Sobic003G045300 Sobic008G090900--Sobic001G375000 Sobic008G090900--Sobic003G128400 Sobic008G090900--Sobic006G088000 Sobic003G045300--Sobic003G128400 Sobic003G045300--Sobic001G375000 Sobic003G045300--Sobic001G003900 Sobic003G045300--Sobic002G181132 Sobic003G045300--Sobic009G092900 Sobic003G045300--Sobic004G003900 Sobic005G184300 Sobic005G184300 Sobic003G045300--Sobic005G184300 Sobic003G045300--Sobic003G162800 Sobic003G045300--Sobic008G090900 Sobic006G166500 Sobic006G166500 Sobic002G181132--Sobic006G166500 Sobic002G181132--Sobic003G045300 Sobic002G181132--Sobic004G003900 Sobic002G181132--Sobic001G375000 Sobic002G181132--Sobic003G162800 Sobic002G181132--Sobic008G090900 Sobic002G181132--Sobic009G092900 Sobic003G345900 Sobic003G345900 Sobic002G181132--Sobic003G345900 Sobic002G156100 Sobic002G156100 Sobic002G181132--Sobic002G156100 Sobic005G117300--Sobic004G003900 Sobic005G117300--Sobic009G092900 Sobic009G085200 Sobic009G085200 Sobic005G117300--Sobic009G085200 Sobic001G025800 Sobic001G025800 Sobic005G117300--Sobic001G025800 Sobic005G117300--Sobic008G090900 Sobic004G065300 Sobic004G065300 Sobic005G117300--Sobic004G065300 Sobic005G117300--Sobic001G346600 Sobic001G495200 Sobic001G495200 Sobic005G117300--Sobic001G495200 Sobic007G208300 Sobic007G208300 Sobic005G117300--Sobic007G208300 Sobic006G128300 Sobic006G128300 Sobic004G079800--Sobic006G128300 Sobic004G079800--Sobic001G495200 Sobic004G079800--Sobic009G092900 Sobic001G025400 Sobic001G025400 Sobic004G079800--Sobic001G025400 Sobic003G150800 Sobic003G150800 Sobic004G079800--Sobic003G150800 Sobic001G198400 Sobic001G198400 Sobic004G079800--Sobic001G198400 Sobic002G274200 Sobic002G274200 Sobic004G079800--Sobic002G274200 Sobic006G038500 Sobic006G038500 Sobic004G079800--Sobic006G038500 Sobic003G085100 Sobic003G085100 Sobic004G079800--Sobic003G085100 Sobic003G128400--Sobic001G375000 Sobic007G101300 Sobic007G101300 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic003G128400--Sobic005G184300 Sobic003G128400--Sobic004G003900 Sobic006G055800 Sobic006G055800 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic002G297400 Sobic002G297400 Sobic003G128400--Sobic002G297400 Sobic010G255100 Sobic010G255100 Sobic003G128400--Sobic010G255100 Sobic001G375000--Sobic003G128400 Sobic001G375000--Sobic003G162800 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic010G027200 Sobic010G027200 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic001G375000--Sobic002G156100 Sobic001G346600--Sobic005G117300 Sobic001G346600--Sobic004G003900 Sobic001G346600--Sobic009G092900 Sobic001G346600--Sobic001G025800 Sobic001G346600--Sobic008G090900 Sobic001G346600--Sobic009G085200 Sobic001G346600--Sobic002G181132 Sobic006G155100 Sobic006G155100 Sobic001G346600--Sobic006G155100 Sobic001G032200 Sobic001G032200 Sobic001G346600--Sobic001G032200
Octagon: transcription factors


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