Gene annotation
Transcriptome id Sobic.001G025800.1
Synonym Sb01g002460, CRR22
Functional annotation pentatricopeptide, putative, expressed
UniProt C5WU11
Pfam PF14432 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF130
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G11290 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os06g02200.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a041182
Brachypodium KQK19988
Barley HORVU7Hr1G011570.3 , HORVU7Hr1G011570.2 , HORVU7Hr1G011570.1 , HORVU7Hr1G011570.6 , HORVU7Hr1G011570.5 , HORVU7Hr1G011570.9 , HORVU7Hr1G011570.8 , HORVU7Hr1G011570.7 , HORVU7Hr1G011570.4 , HORVU7Hr1G011570.13 , HORVU7Hr1G011570.12 , HORVU7Hr1G011570.11 , HORVU7Hr1G011570.10 , HORVU7Hr1G011570.17 , HORVU7Hr1G011570.16 , HORVU7Hr1G011570.15 , HORVU7Hr1G011570.14 , HORVU7Hr1G011570.19 , HORVU7Hr1G011570.18 , HORVU7Hr1G011570.22 , HORVU7Hr1G011570.23 , HORVU7Hr1G011570.20 , HORVU7Hr1G011570.21 , HORVU7Hr1G011570.24
Wheat TraesCS7D02G057100
Populus PNS95880


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
2 Sobic.005G117300 ABC transporter, ATP-binding protein, putative, expressed -
3 Sobic.001G495200 Glutathione reductases(PubMedID : 23783412)@glutathione reductase, putative, expressed K00383: GSR, glutathione reductase (NADPH)
4 Sobic.002G048200 pentatricopeptide, putative, expressed -
5 Sobic.009G251000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SET domain containing protein, expressed -
6 Sobic.001G513800 ankyrin repeat domain containing protein, expressed -
7 Sobic.003G267500 expressed protein -
8 Sobic.007G015300 calreticulin family protein, expressed -
9 Sobic.009G092900 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
10 Sobic.002G181000 chloroplastic group IIA intron splicing facilitator CRS1, chloroplast precursor, putative, expressed -
11 Sobic.001G346600 kinesin heavy chain isolog, putative, expressed -
12 Sobic.010G204900 formamidopyrimidine-DNA glycosylase, putative, expressed K10563: mutM, formamidopyrimidine-DNA glycosylase
13 Sobic.008G095400 - -
14 Sobic.007G090537 - K10956: protein transport protein SEC61 subunit alpha
15 Sobic.008G090900 expressed protein -
16 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
17 Sobic.005G143500 aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed K02434: gatB, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit B
18 Sobic.009G005400 ABC transporter, ATP-binding protein, putative, expressed -
19 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
20 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein


Gene co-expression network
sample Sobic001G025800 Sobic001G025800 Sobic004G003900 Sobic004G003900 Sobic001G025800--Sobic004G003900 Sobic005G117300 Sobic005G117300 Sobic001G025800--Sobic005G117300 Sobic001G495200 Sobic001G495200 Sobic001G025800--Sobic001G495200 Sobic002G048200 Sobic002G048200 Sobic001G025800--Sobic002G048200 Sobic009G251000 Sobic009G251000 Sobic001G025800--Sobic009G251000 Sobic001G513800 Sobic001G513800 Sobic001G025800--Sobic001G513800 Sobic003G267500 Sobic003G267500 Sobic001G025800--Sobic003G267500 Sobic007G015300 Sobic007G015300 Sobic001G025800--Sobic007G015300 Sobic009G092900 Sobic009G092900 Sobic001G025800--Sobic009G092900 Sobic001G375000 Sobic001G375000 Sobic004G003900--Sobic001G375000 Sobic008G090900 Sobic008G090900 Sobic004G003900--Sobic008G090900 Sobic003G128400 Sobic003G128400 Sobic004G003900--Sobic003G128400 Sobic004G003900--Sobic009G092900 Sobic002G181132 Sobic002G181132 Sobic004G003900--Sobic002G181132 Sobic003G045300 Sobic003G045300 Sobic004G003900--Sobic003G045300 Sobic003G162800 Sobic003G162800 Sobic004G003900--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic004G003900--Sobic006G088000 Sobic001G003900 Sobic001G003900 Sobic004G003900--Sobic001G003900 Sobic005G117300--Sobic004G003900 Sobic005G117300--Sobic009G092900 Sobic009G085200 Sobic009G085200 Sobic005G117300--Sobic009G085200 Sobic005G117300--Sobic001G025800 Sobic005G117300--Sobic008G090900 Sobic004G065300 Sobic004G065300 Sobic005G117300--Sobic004G065300 Sobic001G346600 Sobic001G346600 Sobic005G117300--Sobic001G346600 Sobic005G117300--Sobic001G495200 Sobic007G208300 Sobic007G208300 Sobic005G117300--Sobic007G208300 Sobic001G126300 Sobic001G126300 Sobic001G495200--Sobic001G126300 Sobic003G232700 Sobic003G232700 Sobic001G495200--Sobic003G232700 Sobic004G336000 Sobic004G336000 Sobic001G495200--Sobic004G336000 Sobic004G011300 Sobic004G011300 Sobic001G495200--Sobic004G011300 Sobic005G143500 Sobic005G143500 Sobic001G495200--Sobic005G143500 Sobic006G106400 Sobic006G106400 Sobic001G495200--Sobic006G106400 Sobic002G181000 Sobic002G181000 Sobic001G495200--Sobic002G181000 Sobic005G110400 Sobic005G110400 Sobic001G495200--Sobic005G110400 Sobic002G043600 Sobic002G043600 Sobic001G495200--Sobic002G043600 Sobic002G048200--Sobic001G495200 Sobic002G048200--Sobic005G143500 Sobic002G048200--Sobic001G126300 Sobic002G048200--Sobic001G025800 Sobic002G048200--Sobic002G181000 Sobic004G165000 Sobic004G165000 Sobic002G048200--Sobic004G165000 Sobic002G048200--Sobic004G065300 Sobic002G048200--Sobic003G232700 Sobic003G151500 Sobic003G151500 Sobic002G048200--Sobic003G151500 Sobic009G104700 Sobic009G104700 Sobic009G251000--Sobic009G104700 Sobic002G140000 Sobic002G140000 Sobic009G251000--Sobic002G140000 Sobic005G110481 Sobic005G110481 Sobic009G251000--Sobic005G110481 Sobic010G011200 Sobic010G011200 Sobic009G251000--Sobic010G011200 Sobic009G251000--Sobic007G015300 Sobic010G027200 Sobic010G027200 Sobic009G251000--Sobic010G027200 Sobic006G237100 Sobic006G237100 Sobic009G251000--Sobic006G237100 Sobic007G090537 Sobic007G090537 Sobic009G251000--Sobic007G090537 Sobic002G045700 Sobic002G045700 Sobic009G251000--Sobic002G045700 Sobic001G513800--Sobic001G495200 Sobic001G513800--Sobic001G025800 Sobic008G050400 Sobic008G050400 Sobic001G513800--Sobic008G050400 Sobic001G513800--Sobic005G143500 Sobic001G513800--Sobic005G117300 Sobic001G513800--Sobic002G048200 Sobic001G513800--Sobic004G336000 Sobic004G064300 Sobic004G064300 Sobic001G513800--Sobic004G064300 Sobic001G513800--Sobic004G065300 Sobic003G267500--Sobic001G025800 Sobic003G267500--Sobic005G117300 Sobic010G204900 Sobic010G204900 Sobic003G267500--Sobic010G204900 Sobic006G047300 Sobic006G047300 Sobic003G267500--Sobic006G047300 Sobic004G301200 Sobic004G301200 Sobic003G267500--Sobic004G301200 Sobic009G005400 Sobic009G005400 Sobic003G267500--Sobic009G005400 Sobic002G013700 Sobic002G013700 Sobic003G267500--Sobic002G013700 Sobic010G134500 Sobic010G134500 Sobic003G267500--Sobic010G134500 Sobic003G267500--Sobic007G090537 Sobic001G099000 Sobic001G099000 Sobic007G015300--Sobic001G099000 Sobic002G158800 Sobic002G158800 Sobic007G015300--Sobic002G158800 Sobic004G338300 Sobic004G338300 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic007G015300--Sobic002G140000 Sobic005G184300 Sobic005G184300 Sobic007G015300--Sobic005G184300 Sobic007G015300--Sobic001G375000 Sobic007G116100 Sobic007G116100 Sobic007G015300--Sobic007G116100 Sobic007G015300--Sobic003G128400 Sobic009G092900--Sobic004G003900 Sobic009G092900--Sobic008G090900 Sobic009G092900--Sobic003G045300 Sobic009G092900--Sobic002G181132 Sobic009G092900--Sobic005G117300 Sobic004G079800 Sobic004G079800 Sobic009G092900--Sobic004G079800 Sobic009G092900--Sobic003G128400 Sobic009G092900--Sobic001G375000 Sobic009G092900--Sobic001G346600
Octagon: transcription factors


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