Gene annotation
Transcriptome id Sobic.007G015300.1
Synonym Sb07g001380
Functional annotation calreticulin family protein, expressed
UniProt C5YM00
Pfam PF14432 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF339
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G19720 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os03g59264.1 : calreticulin family protein, expressed
MaizeGDB (Corn) Zm00025a040242
Brachypodium KQJ98158 , KQJ98157
Barley HORVU0Hr1G019620.27 , HORVU0Hr1G019620.26 , HORVU0Hr1G019620.25 , HORVU0Hr1G019620.24 , HORVU0Hr1G019620.23 , HORVU0Hr1G019620.22 , HORVU0Hr1G019620.21 , HORVU0Hr1G019620.20 , HORVU0Hr1G019620.29 , HORVU0Hr1G019620.28 , HORVU0Hr1G019620.34 , HORVU0Hr1G019620.35 , HORVU0Hr1G019620.36 , HORVU0Hr1G019620.37 , HORVU0Hr1G019620.32 , HORVU0Hr1G019620.33 , HORVU0Hr1G019620.38 , HORVU0Hr1G019620.39 , HORVU0Hr1G019620.18 , HORVU0Hr1G019620.19 , HORVU0Hr1G019620.16 , HORVU0Hr1G019620.17 , HORVU0Hr1G019620.14 , HORVU0Hr1G019620.15 , HORVU0Hr1G019620.12 , HORVU0Hr1G019620.13 , HORVU0Hr1G019620.10 , HORVU0Hr1G019620.11 , HORVU0Hr1G019620.8 , HORVU0Hr1G019620.9 , HORVU0Hr1G019620.4 , HORVU0Hr1G019620.5 , HORVU0Hr1G019620.6 , HORVU0Hr1G019620.7 , HORVU0Hr1G019620.1 , HORVU0Hr1G019620.2 , HORVU0Hr1G019620.3 , HORVU0Hr1G019620.30 , HORVU0Hr1G019620.31 , HORVU0Hr1G019620.48 , HORVU0Hr1G019620.45 , HORVU0Hr1G019620.44 , HORVU0Hr1G019620.47 , HORVU0Hr1G019620.46 , HORVU0Hr1G019620.41 , HORVU0Hr1G019620.40 , HORVU0Hr1G019620.43 , HORVU0Hr1G019620.42
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G099000 expressed protein -
2 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
3 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
4 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
5 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
6 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
7 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
8 Sobic.007G116100 thioredoxin, putative, expressed -
9 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.001G003900 pentatricopeptide, putative, expressed -
11 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
12 Sobic.002G013700 PPR2, putative, expressed -
13 Sobic.006G055800 mttA/Hcf106 family protein, putative, expressed -
14 Sobic.003G045300 cobalt ion transporter, putative, expressed -
15 Sobic.002G081500 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
16 Sobic.009G251000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SET domain containing protein, expressed -
17 Sobic.007G101300 expressed protein -
18 Sobic.004G255500 SET domain-containing protein, putative, expressed -
19 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
20 Sobic.003G162800 expressed protein -


Gene co-expression network
sample Sobic007G015300 Sobic007G015300 Sobic001G099000 Sobic001G099000 Sobic007G015300--Sobic001G099000 Sobic002G158800 Sobic002G158800 Sobic007G015300--Sobic002G158800 Sobic004G338300 Sobic004G338300 Sobic007G015300--Sobic004G338300 Sobic010G027200 Sobic010G027200 Sobic007G015300--Sobic010G027200 Sobic002G140000 Sobic002G140000 Sobic007G015300--Sobic002G140000 Sobic005G184300 Sobic005G184300 Sobic007G015300--Sobic005G184300 Sobic001G375000 Sobic001G375000 Sobic007G015300--Sobic001G375000 Sobic007G116100 Sobic007G116100 Sobic007G015300--Sobic007G116100 Sobic003G128400 Sobic003G128400 Sobic007G015300--Sobic003G128400 Sobic001G099000--Sobic002G158800 Sobic001G099000--Sobic005G184300 Sobic001G099000--Sobic007G015300 Sobic002G081500 Sobic002G081500 Sobic001G099000--Sobic002G081500 Sobic004G255500 Sobic004G255500 Sobic001G099000--Sobic004G255500 Sobic001G099000--Sobic010G027200 Sobic002G109000 Sobic002G109000 Sobic001G099000--Sobic002G109000 Sobic003G373300 Sobic003G373300 Sobic001G099000--Sobic003G373300 Sobic006G166000 Sobic006G166000 Sobic001G099000--Sobic006G166000 Sobic002G158800--Sobic001G099000 Sobic001G391400 Sobic001G391400 Sobic002G158800--Sobic001G391400 Sobic003G324700 Sobic003G324700 Sobic002G158800--Sobic003G324700 Sobic002G158800--Sobic007G015300 Sobic005G110481 Sobic005G110481 Sobic002G158800--Sobic005G110481 Sobic001G122400 Sobic001G122400 Sobic002G158800--Sobic001G122400 Sobic002G158800--Sobic004G338300 Sobic002G158800--Sobic005G184300 Sobic009G104700 Sobic009G104700 Sobic002G158800--Sobic009G104700 Sobic004G338300--Sobic002G158800 Sobic004G338300--Sobic007G015300 Sobic004G338300--Sobic001G099000 Sobic004G338300--Sobic010G027200 Sobic004G338300--Sobic007G116100 Sobic010G035200 Sobic010G035200 Sobic004G338300--Sobic010G035200 Sobic004G338300--Sobic009G104700 Sobic010G011200 Sobic010G011200 Sobic004G338300--Sobic010G011200 Sobic002G013700 Sobic002G013700 Sobic004G338300--Sobic002G013700 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic006G237100 Sobic006G237100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic010G027200--Sobic004G338300 Sobic010G027200--Sobic009G104700 Sobic002G140000--Sobic010G027200 Sobic002G140000--Sobic007G116100 Sobic002G140000--Sobic007G015300 Sobic005G022800 Sobic005G022800 Sobic002G140000--Sobic005G022800 Sobic002G140000--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic002G140000--Sobic006G263800 Sobic002G140000--Sobic001G099000 Sobic002G140000--Sobic001G375000 Sobic001G321400 Sobic001G321400 Sobic002G140000--Sobic001G321400 Sobic005G184300--Sobic001G099000 Sobic007G101300 Sobic007G101300 Sobic005G184300--Sobic007G101300 Sobic005G184300--Sobic003G128400 Sobic005G184300--Sobic002G158800 Sobic001G003900 Sobic001G003900 Sobic005G184300--Sobic001G003900 Sobic002G297400 Sobic002G297400 Sobic005G184300--Sobic002G297400 Sobic005G184300--Sobic002G081500 Sobic006G055800 Sobic006G055800 Sobic005G184300--Sobic006G055800 Sobic005G184300--Sobic005G110481 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic001G375000--Sobic006G088000 Sobic004G003900 Sobic004G003900 Sobic001G375000--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100 Sobic007G116100--Sobic010G027200 Sobic001G281500 Sobic001G281500 Sobic007G116100--Sobic001G281500 Sobic007G116100--Sobic002G140000 Sobic007G116100--Sobic006G263800 Sobic007G116100--Sobic001G099000 Sobic007G116100--Sobic007G015300 Sobic007G116100--Sobic006G237100 Sobic007G116100--Sobic004G338300 Sobic007G116100--Sobic005G022800 Sobic003G128400--Sobic001G375000 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic003G128400--Sobic005G184300 Sobic003G128400--Sobic004G003900 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic003G128400--Sobic002G297400 Sobic010G255100 Sobic010G255100 Sobic003G128400--Sobic010G255100
Octagon: transcription factors


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