Gene annotation
Transcriptome id Sobic.004G338300.1,Sobic.004G338300.3,Sobic.004G338300.2
Synonym Sb04g036610
Functional annotation rho termination factor, N-terminal domain containing protein, expressed
UniProt A0A1Z5RQ80 , A0A194YTZ9 , A0A194YSU9
Pfam PF07498
Panther DB PTHR34449 PTHR34449:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006353; DNA-templated transcription, termination


Orthologs (automatic annotation)
TAIR AT1G06190 : Rho termination factor
RAP-DB (Rice) LOC_Os03g08480.2 : rho termination factor, N-terminal domain containing protein, expressed
MaizeGDB (Corn) Zm00025a022540 , Zm00025a032854
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
2 Sobic.007G015300 calreticulin family protein, expressed -
3 Sobic.001G099000 expressed protein -
4 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
5 Sobic.007G116100 thioredoxin, putative, expressed -
6 Sobic.010G035200 whirly transcription factor domain containing protein, expressed -
7 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
8 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
9 Sobic.002G013700 PPR2, putative, expressed -
10 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
11 Sobic.002G045700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polynucleotide phosphorylase, putative, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
12 Sobic.004G255500 SET domain-containing protein, putative, expressed -
13 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
14 Sobic.005G110481 - -
15 Sobic.007G171800 RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
16 Sobic.001G003900 pentatricopeptide, putative, expressed -
17 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
18 Sobic.007G101300 expressed protein -
19 Sobic.003G324700 expressed protein -
20 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit


Gene co-expression network
sample Sobic004G338300 Sobic004G338300 Sobic002G158800 Sobic002G158800 Sobic004G338300--Sobic002G158800 Sobic007G015300 Sobic007G015300 Sobic004G338300--Sobic007G015300 Sobic001G099000 Sobic001G099000 Sobic004G338300--Sobic001G099000 Sobic010G027200 Sobic010G027200 Sobic004G338300--Sobic010G027200 Sobic007G116100 Sobic007G116100 Sobic004G338300--Sobic007G116100 Sobic010G035200 Sobic010G035200 Sobic004G338300--Sobic010G035200 Sobic009G104700 Sobic009G104700 Sobic004G338300--Sobic009G104700 Sobic010G011200 Sobic010G011200 Sobic004G338300--Sobic010G011200 Sobic002G013700 Sobic002G013700 Sobic004G338300--Sobic002G013700 Sobic002G158800--Sobic001G099000 Sobic001G391400 Sobic001G391400 Sobic002G158800--Sobic001G391400 Sobic003G324700 Sobic003G324700 Sobic002G158800--Sobic003G324700 Sobic002G158800--Sobic007G015300 Sobic005G110481 Sobic005G110481 Sobic002G158800--Sobic005G110481 Sobic001G122400 Sobic001G122400 Sobic002G158800--Sobic001G122400 Sobic002G158800--Sobic004G338300 Sobic005G184300 Sobic005G184300 Sobic002G158800--Sobic005G184300 Sobic002G158800--Sobic009G104700 Sobic007G015300--Sobic001G099000 Sobic007G015300--Sobic002G158800 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic002G140000 Sobic002G140000 Sobic007G015300--Sobic002G140000 Sobic007G015300--Sobic005G184300 Sobic001G375000 Sobic001G375000 Sobic007G015300--Sobic001G375000 Sobic007G015300--Sobic007G116100 Sobic003G128400 Sobic003G128400 Sobic007G015300--Sobic003G128400 Sobic001G099000--Sobic002G158800 Sobic001G099000--Sobic005G184300 Sobic001G099000--Sobic007G015300 Sobic002G081500 Sobic002G081500 Sobic001G099000--Sobic002G081500 Sobic004G255500 Sobic004G255500 Sobic001G099000--Sobic004G255500 Sobic001G099000--Sobic010G027200 Sobic002G109000 Sobic002G109000 Sobic001G099000--Sobic002G109000 Sobic003G373300 Sobic003G373300 Sobic001G099000--Sobic003G373300 Sobic006G166000 Sobic006G166000 Sobic001G099000--Sobic006G166000 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic006G237100 Sobic006G237100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic010G027200--Sobic004G338300 Sobic010G027200--Sobic009G104700 Sobic007G116100--Sobic010G027200 Sobic001G281500 Sobic001G281500 Sobic007G116100--Sobic001G281500 Sobic007G116100--Sobic002G140000 Sobic006G263800 Sobic006G263800 Sobic007G116100--Sobic006G263800 Sobic007G116100--Sobic001G099000 Sobic007G116100--Sobic007G015300 Sobic007G116100--Sobic006G237100 Sobic007G116100--Sobic004G338300 Sobic005G022800 Sobic005G022800 Sobic007G116100--Sobic005G022800 Sobic001G469933 Sobic001G469933 Sobic010G035200--Sobic001G469933 Sobic010G035200--Sobic003G324700 Sobic007G171800 Sobic007G171800 Sobic010G035200--Sobic007G171800 Sobic002G131700 Sobic002G131700 Sobic010G035200--Sobic002G131700 Sobic001G083100 Sobic001G083100 Sobic010G035200--Sobic001G083100 Sobic010G035200--Sobic001G122400 Sobic008G039600 Sobic008G039600 Sobic010G035200--Sobic008G039600 Sobic009G131600 Sobic009G131600 Sobic010G035200--Sobic009G131600 Sobic004G164100 Sobic004G164100 Sobic010G035200--Sobic004G164100 Sobic009G104700--Sobic005G110481 Sobic009G104700--Sobic002G158800 Sobic007G101300 Sobic007G101300 Sobic009G104700--Sobic007G101300 Sobic009G104700--Sobic010G011200 Sobic009G104700--Sobic002G013700 Sobic009G104700--Sobic005G184300 Sobic003G444500 Sobic003G444500 Sobic009G104700--Sobic003G444500 Sobic009G104700--Sobic003G128400 Sobic009G104700--Sobic003G373300 Sobic010G011200--Sobic005G110481 Sobic010G011200--Sobic007G171800 Sobic010G012900 Sobic010G012900 Sobic010G011200--Sobic010G012900 Sobic001G148200 Sobic001G148200 Sobic010G011200--Sobic001G148200 Sobic010G011200--Sobic002G013700 Sobic009G001500 Sobic009G001500 Sobic010G011200--Sobic009G001500 Sobic001G383900 Sobic001G383900 Sobic010G011200--Sobic001G383900 Sobic010G011200--Sobic009G104700 Sobic009G098100 Sobic009G098100 Sobic010G011200--Sobic009G098100 Sobic002G013700--Sobic005G110481 Sobic002G013700--Sobic007G171800 Sobic002G013700--Sobic010G011200 Sobic002G013700--Sobic007G101300 Sobic002G251400 Sobic002G251400 Sobic002G013700--Sobic002G251400 Sobic002G013700--Sobic009G104700 Sobic002G013700--Sobic002G158800 Sobic002G013700--Sobic001G148200 Sobic009G042200 Sobic009G042200 Sobic002G013700--Sobic009G042200
Octagon: transcription factors


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