Gene annotation
Transcriptome id Sobic.001G099000.1
Synonym Sb01g008850
Functional annotation expressed protein
UniProt C5X1C7
Pfam PF03602
Panther DB PTHR18895 PTHR18895:SF60
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT3G28460 : methyltransferases
RAP-DB (Rice) LOC_Os03g52640.2 : expressed protein
MaizeGDB (Corn) Zm00025a016860
Brachypodium KQK13337 , KQK13336
Barley HORVU4Hr1G011120.7 , HORVU4Hr1G011120.6 , HORVU4Hr1G011120.5 , HORVU4Hr1G011120.4 , HORVU4Hr1G011120.3 , HORVU4Hr1G011120.2 , HORVU4Hr1G011120.1 , HORVU4Hr1G011120.9 , HORVU4Hr1G011120.8
Wheat TraesCS4A02G248100 , TraesCS4B02G066800 , TraesCS4B02G066800 , TraesCS4D02G065700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
2 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
3 Sobic.007G015300 calreticulin family protein, expressed -
4 Sobic.002G081500 glycerol-3-phosphate dehydrogenase, putative, expressed K00006: glycerol-3-phosphate dehydrogenase (NAD+)
5 Sobic.004G255500 SET domain-containing protein, putative, expressed -
6 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
7 Sobic.002G109000 tetratricopeptide repeat containing protein, putative, expressed -
8 Sobic.003G373300 DNA polymerase I, putative, expressed -
9 Sobic.006G166000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
10 Sobic.002G297400 tetratricopeptide repeat domain containing protein, expressed -
11 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
12 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
13 Sobic.001G003900 pentatricopeptide, putative, expressed -
14 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
15 Sobic.007G116100 thioredoxin, putative, expressed -
16 Sobic.005G110481 - -
17 Sobic.002G013700 PPR2, putative, expressed -
18 Sobic.003G324700 expressed protein -
19 Sobic.001G469933 - K02946: RP-S10, MRPS10, small subunit ribosomal protein S10
20 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1


Gene co-expression network
sample Sobic001G099000 Sobic001G099000 Sobic002G158800 Sobic002G158800 Sobic001G099000--Sobic002G158800 Sobic005G184300 Sobic005G184300 Sobic001G099000--Sobic005G184300 Sobic007G015300 Sobic007G015300 Sobic001G099000--Sobic007G015300 Sobic002G081500 Sobic002G081500 Sobic001G099000--Sobic002G081500 Sobic004G255500 Sobic004G255500 Sobic001G099000--Sobic004G255500 Sobic010G027200 Sobic010G027200 Sobic001G099000--Sobic010G027200 Sobic002G109000 Sobic002G109000 Sobic001G099000--Sobic002G109000 Sobic003G373300 Sobic003G373300 Sobic001G099000--Sobic003G373300 Sobic006G166000 Sobic006G166000 Sobic001G099000--Sobic006G166000 Sobic002G158800--Sobic001G099000 Sobic001G391400 Sobic001G391400 Sobic002G158800--Sobic001G391400 Sobic003G324700 Sobic003G324700 Sobic002G158800--Sobic003G324700 Sobic002G158800--Sobic007G015300 Sobic005G110481 Sobic005G110481 Sobic002G158800--Sobic005G110481 Sobic001G122400 Sobic001G122400 Sobic002G158800--Sobic001G122400 Sobic004G338300 Sobic004G338300 Sobic002G158800--Sobic004G338300 Sobic002G158800--Sobic005G184300 Sobic009G104700 Sobic009G104700 Sobic002G158800--Sobic009G104700 Sobic005G184300--Sobic001G099000 Sobic007G101300 Sobic007G101300 Sobic005G184300--Sobic007G101300 Sobic003G128400 Sobic003G128400 Sobic005G184300--Sobic003G128400 Sobic005G184300--Sobic002G158800 Sobic001G003900 Sobic001G003900 Sobic005G184300--Sobic001G003900 Sobic002G297400 Sobic002G297400 Sobic005G184300--Sobic002G297400 Sobic005G184300--Sobic002G081500 Sobic006G055800 Sobic006G055800 Sobic005G184300--Sobic006G055800 Sobic005G184300--Sobic005G110481 Sobic007G015300--Sobic001G099000 Sobic007G015300--Sobic002G158800 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic002G140000 Sobic002G140000 Sobic007G015300--Sobic002G140000 Sobic007G015300--Sobic005G184300 Sobic001G375000 Sobic001G375000 Sobic007G015300--Sobic001G375000 Sobic007G116100 Sobic007G116100 Sobic007G015300--Sobic007G116100 Sobic007G015300--Sobic003G128400 Sobic002G081500--Sobic001G099000 Sobic001G469933 Sobic001G469933 Sobic002G081500--Sobic001G469933 Sobic002G081500--Sobic005G184300 Sobic002G081500--Sobic006G055800 Sobic002G081500--Sobic002G297400 Sobic005G110400 Sobic005G110400 Sobic002G081500--Sobic005G110400 Sobic004G020800 Sobic004G020800 Sobic002G081500--Sobic004G020800 Sobic001G037500 Sobic001G037500 Sobic002G081500--Sobic001G037500 Sobic002G081500--Sobic002G158800 Sobic004G255500--Sobic001G099000 Sobic001G448600 Sobic001G448600 Sobic004G255500--Sobic001G448600 Sobic005G022800 Sobic005G022800 Sobic004G255500--Sobic005G022800 Sobic001G281500 Sobic001G281500 Sobic004G255500--Sobic001G281500 Sobic002G013700 Sobic002G013700 Sobic004G255500--Sobic002G013700 Sobic004G255500--Sobic010G027200 Sobic004G255500--Sobic005G184300 Sobic004G255500--Sobic002G140000 Sobic004G255500--Sobic007G015300 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic006G237100 Sobic006G237100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic010G027200--Sobic004G338300 Sobic010G027200--Sobic009G104700 Sobic002G109000--Sobic006G055800 Sobic002G109000--Sobic001G099000 Sobic002G109000--Sobic002G297400 Sobic002G109000--Sobic001G122400 Sobic002G109000--Sobic003G324700 Sobic001G368500 Sobic001G368500 Sobic002G109000--Sobic001G368500 Sobic003G045300 Sobic003G045300 Sobic002G109000--Sobic003G045300 Sobic002G109000--Sobic002G081500 Sobic002G109000--Sobic003G128400 Sobic003G373300--Sobic001G099000 Sobic003G373300--Sobic006G166000 Sobic003G373300--Sobic001G391400 Sobic001G383900 Sobic001G383900 Sobic003G373300--Sobic001G383900 Sobic003G373300--Sobic002G158800 Sobic003G373300--Sobic005G110481 Sobic003G373300--Sobic009G104700 Sobic003G373300--Sobic010G027200 Sobic003G373300--Sobic005G022800 Sobic006G166000--Sobic001G391400 Sobic006G166000--Sobic003G373300 Sobic006G166000--Sobic001G099000 Sobic003G030900 Sobic003G030900 Sobic006G166000--Sobic003G030900 Sobic006G166000--Sobic002G158800 Sobic001G040000 Sobic001G040000 Sobic006G166000--Sobic001G040000 Sobic006G107600 Sobic006G107600 Sobic006G166000--Sobic006G107600 Sobic002G251400 Sobic002G251400 Sobic006G166000--Sobic002G251400 Sobic006G166000--Sobic005G110481
Octagon: transcription factors


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