Gene annotation
Transcriptome id Sobic.006G166000.1
Synonym Sb06g024190
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PPR repeat domain containing protein, putative, expressed
UniProt C5YD36
Pfam PF13181 PF13041 PF01535
Panther DB PTHR24015 PTHR24015:SF27
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G02150 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os04g46010.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a010373
Brachypodium KQJ83881
Barley HORVU2Hr1G093220.8 , HORVU2Hr1G093220.9 , HORVU2Hr1G093220.4 , HORVU2Hr1G093220.5 , HORVU2Hr1G093220.6 , HORVU2Hr1G093220.7 , HORVU2Hr1G093220.1 , HORVU2Hr1G093220.2 , HORVU2Hr1G093220.3 , HORVU2Hr1G093220.10
Wheat TraesCS2A02G391600 , TraesCS2D02G389900 , TraesCS2B02G410100
Populus -


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cDNA sequences
Sobic.006G166000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
2 Sobic.003G373300 DNA polymerase I, putative, expressed -
3 Sobic.001G099000 expressed protein -
4 Sobic.003G030900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
6 Sobic.001G040000 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
7 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
8 Sobic.002G251400 expressed protein -
9 Sobic.005G110481 - -
10 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
11 Sobic.003G295800 ribosomal protein L13, putative, expressed K02871: RP-L13, MRPL13, large subunit ribosomal protein L13
12 Sobic.007G013400 ribosome recycling factor, putative, expressed K02838: frr, MRRF, ribosome recycling factor
13 Sobic.001G122400 ribosomal protein S13p/S18e, putative, expressed K02952: RP-S13, small subunit ribosomal protein S13
14 Sobic.001G240000 ribosomal protein L28 protein, putative, expressed K02902: RP-L28, MRPL28, large subunit ribosomal protein L28
15 Sobic.002G305700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@2Fe-2S iron-sulfur cluster binding domain containing protein, expressed -
16 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
17 Sobic.003G256200 ribosomal protein rpS20, putative, expressed K02968: RP-S20, small subunit ribosomal protein S20
18 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
19 Sobic.007G155600 DJ-1 family protein, putative, expressed K03152: protein deglycase
20 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18


Gene co-expression network
sample Sobic006G166000 Sobic006G166000 Sobic001G391400 Sobic001G391400 Sobic006G166000--Sobic001G391400 Sobic003G373300 Sobic003G373300 Sobic006G166000--Sobic003G373300 Sobic001G099000 Sobic001G099000 Sobic006G166000--Sobic001G099000 Sobic003G030900 Sobic003G030900 Sobic006G166000--Sobic003G030900 Sobic002G158800 Sobic002G158800 Sobic006G166000--Sobic002G158800 Sobic001G040000 Sobic001G040000 Sobic006G166000--Sobic001G040000 Sobic006G107600 Sobic006G107600 Sobic006G166000--Sobic006G107600 Sobic002G251400 Sobic002G251400 Sobic006G166000--Sobic002G251400 Sobic005G110481 Sobic005G110481 Sobic006G166000--Sobic005G110481 Sobic001G391400--Sobic001G040000 Sobic001G527100 Sobic001G527100 Sobic001G391400--Sobic001G527100 Sobic001G122400 Sobic001G122400 Sobic001G391400--Sobic001G122400 Sobic004G335800 Sobic004G335800 Sobic001G391400--Sobic004G335800 Sobic004G116100 Sobic004G116100 Sobic001G391400--Sobic004G116100 Sobic001G240000 Sobic001G240000 Sobic001G391400--Sobic001G240000 Sobic001G453300 Sobic001G453300 Sobic001G391400--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic001G391400--Sobic004G298100 Sobic003G014100 Sobic003G014100 Sobic001G391400--Sobic003G014100 Sobic003G373300--Sobic001G099000 Sobic003G373300--Sobic006G166000 Sobic003G373300--Sobic001G391400 Sobic001G383900 Sobic001G383900 Sobic003G373300--Sobic001G383900 Sobic003G373300--Sobic002G158800 Sobic003G373300--Sobic005G110481 Sobic009G104700 Sobic009G104700 Sobic003G373300--Sobic009G104700 Sobic010G027200 Sobic010G027200 Sobic003G373300--Sobic010G027200 Sobic005G022800 Sobic005G022800 Sobic003G373300--Sobic005G022800 Sobic001G099000--Sobic002G158800 Sobic005G184300 Sobic005G184300 Sobic001G099000--Sobic005G184300 Sobic007G015300 Sobic007G015300 Sobic001G099000--Sobic007G015300 Sobic002G081500 Sobic002G081500 Sobic001G099000--Sobic002G081500 Sobic004G255500 Sobic004G255500 Sobic001G099000--Sobic004G255500 Sobic001G099000--Sobic010G027200 Sobic002G109000 Sobic002G109000 Sobic001G099000--Sobic002G109000 Sobic001G099000--Sobic003G373300 Sobic001G099000--Sobic006G166000 Sobic001G027600 Sobic001G027600 Sobic003G030900--Sobic001G027600 Sobic004G044000 Sobic004G044000 Sobic003G030900--Sobic004G044000 Sobic006G248200 Sobic006G248200 Sobic003G030900--Sobic006G248200 Sobic003G030900--Sobic001G040000 Sobic003G030900--Sobic001G240000 Sobic007G013400 Sobic007G013400 Sobic003G030900--Sobic007G013400 Sobic002G242600 Sobic002G242600 Sobic003G030900--Sobic002G242600 Sobic004G317900 Sobic004G317900 Sobic003G030900--Sobic004G317900 Sobic001G531200 Sobic001G531200 Sobic003G030900--Sobic001G531200 Sobic002G158800--Sobic001G099000 Sobic002G158800--Sobic001G391400 Sobic003G324700 Sobic003G324700 Sobic002G158800--Sobic003G324700 Sobic002G158800--Sobic007G015300 Sobic002G158800--Sobic005G110481 Sobic002G158800--Sobic001G122400 Sobic004G338300 Sobic004G338300 Sobic002G158800--Sobic004G338300 Sobic002G158800--Sobic005G184300 Sobic002G158800--Sobic009G104700 Sobic001G040000--Sobic004G335800 Sobic001G040000--Sobic001G391400 Sobic001G040000--Sobic001G240000 Sobic001G040000--Sobic001G527100 Sobic003G295800 Sobic003G295800 Sobic001G040000--Sobic003G295800 Sobic001G040000--Sobic002G251400 Sobic001G040000--Sobic004G116100 Sobic001G040000--Sobic001G122400 Sobic003G386300 Sobic003G386300 Sobic001G040000--Sobic003G386300 Sobic003G256200 Sobic003G256200 Sobic006G107600--Sobic003G256200 Sobic006G107600--Sobic001G240000 Sobic007G171800 Sobic007G171800 Sobic006G107600--Sobic007G171800 Sobic006G107600--Sobic001G040000 Sobic006G107600--Sobic001G391400 Sobic002G305700 Sobic002G305700 Sobic006G107600--Sobic002G305700 Sobic006G107600--Sobic001G122400 Sobic001G191000 Sobic001G191000 Sobic006G107600--Sobic001G191000 Sobic006G107600--Sobic001G453300 Sobic002G251400--Sobic001G040000 Sobic004G164100 Sobic004G164100 Sobic002G251400--Sobic004G164100 Sobic002G251400--Sobic001G240000 Sobic002G251400--Sobic003G386300 Sobic002G251400--Sobic001G122400 Sobic002G251400--Sobic004G335800 Sobic002G251400--Sobic001G527100 Sobic002G251400--Sobic007G013400 Sobic002G251400--Sobic003G295800 Sobic010G011200 Sobic010G011200 Sobic005G110481--Sobic010G011200 Sobic001G148200 Sobic001G148200 Sobic005G110481--Sobic001G148200 Sobic005G110481--Sobic007G171800 Sobic009G042200 Sobic009G042200 Sobic005G110481--Sobic009G042200 Sobic007G101300 Sobic007G101300 Sobic005G110481--Sobic007G101300 Sobic005G110481--Sobic009G104700 Sobic005G110481--Sobic007G013400 Sobic002G013700 Sobic002G013700 Sobic005G110481--Sobic002G013700 Sobic005G110481--Sobic002G251400
Octagon: transcription factors


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