Gene annotation
Transcriptome id Sobic.003G373300.2,Sobic.003G373300.1
Synonym Sb03g041390
Functional annotation DNA polymerase I, putative, expressed
UniProt A0A1W0W0P3 , A0A1W0W0S9
Pfam PF02739 PF01367 PF02739
Panther DB PTHR10133 PTHR10133:SF38
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding GO:0003824catalytic activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT1G34380 : 5\'-3\' exonuclease family protein
RAP-DB (Rice) LOC_Os01g65400.4,LOC_Os01g65400.1 : DNA polymerase I, putative, expressed
MaizeGDB (Corn) Zm00025a039539 , Zm00025a039536 , Zm00025a026624
Brachypodium KQK10839 , KQK10838 , PNT73286 , KQK10840 , KQK10841 , KQK10842
Barley -
Wheat TraesCS3D02G378400 , TraesCS3B02G417600 , TraesCS3A02G385400
Populus -


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cDNA sequences
Sobic.003G373300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G099000 expressed protein -
2 Sobic.006G166000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
3 Sobic.001G391400 S1 RNA binding domain containing protein, expressed K02945: RP-S1, small subunit ribosomal protein S1
4 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -
6 Sobic.005G110481 - -
7 Sobic.009G104700 prenyltransferase, putative, expressed K04040: chlG, chlorophyll/bacteriochlorophyll a synthase
8 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
9 Sobic.005G022800 GTP binding protein, putative, expressed -
10 Sobic.002G013700 PPR2, putative, expressed -
11 Sobic.009G042200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsDegp6 - Putative Deg protease homologue, expressed -
12 Sobic.007G101300 expressed protein -
13 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
14 Sobic.010G011200 T-complex protein, putative, expressed K04077: groEL, chaperonin GroEL
15 Sobic.003G132600 plastid-specific 50S ribosomal protein 5, chloroplast precursor, putative, expressed K19034: 50S ribosomal protein 5
16 Sobic.006G107600 plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative, expressed K19032: 30S ribosomal protein 3
17 Sobic.007G116100 thioredoxin, putative, expressed -
18 Sobic.001G453300 50S ribosomal protein L15, chloroplast precursor, putative, expressed K02876: RP-L15, MRPL15, large subunit ribosomal protein L15
19 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
20 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase


Gene co-expression network
sample Sobic003G373300 Sobic003G373300 Sobic001G099000 Sobic001G099000 Sobic003G373300--Sobic001G099000 Sobic006G166000 Sobic006G166000 Sobic003G373300--Sobic006G166000 Sobic001G391400 Sobic001G391400 Sobic003G373300--Sobic001G391400 Sobic001G383900 Sobic001G383900 Sobic003G373300--Sobic001G383900 Sobic002G158800 Sobic002G158800 Sobic003G373300--Sobic002G158800 Sobic005G110481 Sobic005G110481 Sobic003G373300--Sobic005G110481 Sobic009G104700 Sobic009G104700 Sobic003G373300--Sobic009G104700 Sobic010G027200 Sobic010G027200 Sobic003G373300--Sobic010G027200 Sobic005G022800 Sobic005G022800 Sobic003G373300--Sobic005G022800 Sobic001G099000--Sobic002G158800 Sobic005G184300 Sobic005G184300 Sobic001G099000--Sobic005G184300 Sobic007G015300 Sobic007G015300 Sobic001G099000--Sobic007G015300 Sobic002G081500 Sobic002G081500 Sobic001G099000--Sobic002G081500 Sobic004G255500 Sobic004G255500 Sobic001G099000--Sobic004G255500 Sobic001G099000--Sobic010G027200 Sobic002G109000 Sobic002G109000 Sobic001G099000--Sobic002G109000 Sobic001G099000--Sobic003G373300 Sobic001G099000--Sobic006G166000 Sobic006G166000--Sobic001G391400 Sobic006G166000--Sobic003G373300 Sobic006G166000--Sobic001G099000 Sobic003G030900 Sobic003G030900 Sobic006G166000--Sobic003G030900 Sobic006G166000--Sobic002G158800 Sobic001G040000 Sobic001G040000 Sobic006G166000--Sobic001G040000 Sobic006G107600 Sobic006G107600 Sobic006G166000--Sobic006G107600 Sobic002G251400 Sobic002G251400 Sobic006G166000--Sobic002G251400 Sobic006G166000--Sobic005G110481 Sobic001G391400--Sobic001G040000 Sobic001G527100 Sobic001G527100 Sobic001G391400--Sobic001G527100 Sobic001G122400 Sobic001G122400 Sobic001G391400--Sobic001G122400 Sobic004G335800 Sobic004G335800 Sobic001G391400--Sobic004G335800 Sobic004G116100 Sobic004G116100 Sobic001G391400--Sobic004G116100 Sobic001G240000 Sobic001G240000 Sobic001G391400--Sobic001G240000 Sobic001G453300 Sobic001G453300 Sobic001G391400--Sobic001G453300 Sobic004G298100 Sobic004G298100 Sobic001G391400--Sobic004G298100 Sobic003G014100 Sobic003G014100 Sobic001G391400--Sobic003G014100 Sobic001G383900--Sobic001G453300 Sobic001G027600 Sobic001G027600 Sobic001G383900--Sobic001G027600 Sobic001G076500 Sobic001G076500 Sobic001G383900--Sobic001G076500 Sobic004G044000 Sobic004G044000 Sobic001G383900--Sobic004G044000 Sobic009G098100 Sobic009G098100 Sobic001G383900--Sobic009G098100 Sobic003G132600 Sobic003G132600 Sobic001G383900--Sobic003G132600 Sobic001G427000 Sobic001G427000 Sobic001G383900--Sobic001G427000 Sobic001G383900--Sobic001G391400 Sobic009G001500 Sobic009G001500 Sobic001G383900--Sobic009G001500 Sobic002G158800--Sobic001G099000 Sobic002G158800--Sobic001G391400 Sobic003G324700 Sobic003G324700 Sobic002G158800--Sobic003G324700 Sobic002G158800--Sobic007G015300 Sobic002G158800--Sobic005G110481 Sobic002G158800--Sobic001G122400 Sobic004G338300 Sobic004G338300 Sobic002G158800--Sobic004G338300 Sobic002G158800--Sobic005G184300 Sobic002G158800--Sobic009G104700 Sobic010G011200 Sobic010G011200 Sobic005G110481--Sobic010G011200 Sobic001G148200 Sobic001G148200 Sobic005G110481--Sobic001G148200 Sobic007G171800 Sobic007G171800 Sobic005G110481--Sobic007G171800 Sobic009G042200 Sobic009G042200 Sobic005G110481--Sobic009G042200 Sobic007G101300 Sobic007G101300 Sobic005G110481--Sobic007G101300 Sobic005G110481--Sobic009G104700 Sobic007G013400 Sobic007G013400 Sobic005G110481--Sobic007G013400 Sobic002G013700 Sobic002G013700 Sobic005G110481--Sobic002G013700 Sobic005G110481--Sobic002G251400 Sobic009G104700--Sobic005G110481 Sobic009G104700--Sobic002G158800 Sobic009G104700--Sobic007G101300 Sobic009G104700--Sobic010G011200 Sobic009G104700--Sobic002G013700 Sobic009G104700--Sobic005G184300 Sobic003G444500 Sobic003G444500 Sobic009G104700--Sobic003G444500 Sobic003G128400 Sobic003G128400 Sobic009G104700--Sobic003G128400 Sobic009G104700--Sobic003G373300 Sobic002G140000 Sobic002G140000 Sobic010G027200--Sobic002G140000 Sobic001G375000 Sobic001G375000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic007G116100 Sobic007G116100 Sobic010G027200--Sobic007G116100 Sobic006G237100 Sobic006G237100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic010G027200--Sobic004G338300 Sobic010G027200--Sobic009G104700 Sobic005G022800--Sobic002G140000 Sobic006G263800 Sobic006G263800 Sobic005G022800--Sobic006G263800 Sobic005G022800--Sobic004G255500 Sobic005G022800--Sobic003G373300 Sobic005G197300 Sobic005G197300 Sobic005G022800--Sobic005G197300 Sobic005G022800--Sobic001G099000 Sobic005G022800--Sobic007G116100 Sobic005G022800--Sobic010G027200 Sobic008G021700 Sobic008G021700 Sobic005G022800--Sobic008G021700
Octagon: transcription factors


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