Gene annotation
Transcriptome id Sobic.001G003900.1
Synonym
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6QGR6
Pfam PF07386 PF01535
Panther DB PTHR24015 PTHR24015:SF662
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G13410 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os02g41560.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a016285 , Zm00025a016286
Brachypodium KQK00409 , KQK11989
Barley HORVU6Hr1G065350.1 , HORVU5Hr1G124920.5 , HORVU5Hr1G124920.4 , HORVU5Hr1G124920.7 , HORVU5Hr1G124920.6 , HORVU5Hr1G124920.1 , HORVU5Hr1G124920.3 , HORVU5Hr1G124920.2
Wheat TraesCS5D02G567000 , TraesCS5B02G562400 , TraesCS5B02G562400 , TraesCS5B02G562400
Populus -


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cDNA sequences
Sobic.001G003900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G184300 seryl-tRNA synthetase, putative, expressed K01875: SARS, seryl-tRNA synthetase
2 Sobic.003G045300 cobalt ion transporter, putative, expressed -
3 Sobic.001G099000 expressed protein -
4 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
5 Sobic.001G382800 ABC transporter, ATP-binding protein, putative, expressed K09013: Fe-S cluster assembly ATP-binding protein
6 Sobic.003G128400 OsClp1 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
7 Sobic.007G015300 calreticulin family protein, expressed -
8 Sobic.004G003900 nitric oxide synthase 1, putative, expressed K13427: nitric-oxide synthase, plant
9 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.003G327200 GHMP kinases ATP-binding protein, putative, expressed K00919: 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
11 Sobic.003G162800 expressed protein -
12 Sobic.007G101300 expressed protein -
13 Sobic.001G022500 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
14 Sobic.008G090900 expressed protein -
15 Sobic.010G255100 delta-aminolevulinic acid dehydratase, chloroplast precursor, putative, expressed K01698: hemB, porphobilinogen synthase
16 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
17 Sobic.004G225600 - -
18 Sobic.006G088000 translocon Tic40, putative, expressed -
19 Sobic.002G181132 - -
20 Sobic.002G158800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide repeat containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G003900 Sobic001G003900 Sobic005G184300 Sobic005G184300 Sobic001G003900--Sobic005G184300 Sobic003G045300 Sobic003G045300 Sobic001G003900--Sobic003G045300 Sobic001G099000 Sobic001G099000 Sobic001G003900--Sobic001G099000 Sobic001G375000 Sobic001G375000 Sobic001G003900--Sobic001G375000 Sobic001G382800 Sobic001G382800 Sobic001G003900--Sobic001G382800 Sobic003G128400 Sobic003G128400 Sobic001G003900--Sobic003G128400 Sobic007G015300 Sobic007G015300 Sobic001G003900--Sobic007G015300 Sobic004G003900 Sobic004G003900 Sobic001G003900--Sobic004G003900 Sobic010G027200 Sobic010G027200 Sobic001G003900--Sobic010G027200 Sobic005G184300--Sobic001G099000 Sobic007G101300 Sobic007G101300 Sobic005G184300--Sobic007G101300 Sobic005G184300--Sobic003G128400 Sobic002G158800 Sobic002G158800 Sobic005G184300--Sobic002G158800 Sobic005G184300--Sobic001G003900 Sobic002G297400 Sobic002G297400 Sobic005G184300--Sobic002G297400 Sobic002G081500 Sobic002G081500 Sobic005G184300--Sobic002G081500 Sobic006G055800 Sobic006G055800 Sobic005G184300--Sobic006G055800 Sobic005G110481 Sobic005G110481 Sobic005G184300--Sobic005G110481 Sobic003G045300--Sobic003G128400 Sobic003G045300--Sobic001G375000 Sobic003G045300--Sobic001G003900 Sobic002G181132 Sobic002G181132 Sobic003G045300--Sobic002G181132 Sobic009G092900 Sobic009G092900 Sobic003G045300--Sobic009G092900 Sobic003G045300--Sobic004G003900 Sobic003G045300--Sobic005G184300 Sobic003G162800 Sobic003G162800 Sobic003G045300--Sobic003G162800 Sobic008G090900 Sobic008G090900 Sobic003G045300--Sobic008G090900 Sobic001G099000--Sobic002G158800 Sobic001G099000--Sobic005G184300 Sobic001G099000--Sobic007G015300 Sobic001G099000--Sobic002G081500 Sobic004G255500 Sobic004G255500 Sobic001G099000--Sobic004G255500 Sobic001G099000--Sobic010G027200 Sobic002G109000 Sobic002G109000 Sobic001G099000--Sobic002G109000 Sobic003G373300 Sobic003G373300 Sobic001G099000--Sobic003G373300 Sobic006G166000 Sobic006G166000 Sobic001G099000--Sobic006G166000 Sobic001G375000--Sobic003G128400 Sobic001G375000--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic001G375000--Sobic006G088000 Sobic001G375000--Sobic004G003900 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic006G237100 Sobic006G237100 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100 Sobic010G255100 Sobic010G255100 Sobic001G382800--Sobic010G255100 Sobic001G382800--Sobic003G128400 Sobic001G382800--Sobic008G090900 Sobic001G382800--Sobic001G003900 Sobic001G382800--Sobic002G156100 Sobic001G382800--Sobic001G375000 Sobic001G382800--Sobic006G088000 Sobic002G293600 Sobic002G293600 Sobic001G382800--Sobic002G293600 Sobic001G382800--Sobic003G045300 Sobic003G128400--Sobic001G375000 Sobic003G128400--Sobic007G101300 Sobic003G128400--Sobic003G045300 Sobic003G128400--Sobic005G184300 Sobic003G128400--Sobic004G003900 Sobic003G128400--Sobic006G055800 Sobic003G128400--Sobic002G156100 Sobic003G128400--Sobic002G297400 Sobic003G128400--Sobic010G255100 Sobic007G015300--Sobic001G099000 Sobic007G015300--Sobic002G158800 Sobic004G338300 Sobic004G338300 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic002G140000 Sobic002G140000 Sobic007G015300--Sobic002G140000 Sobic007G015300--Sobic005G184300 Sobic007G015300--Sobic001G375000 Sobic007G116100 Sobic007G116100 Sobic007G015300--Sobic007G116100 Sobic007G015300--Sobic003G128400 Sobic004G003900--Sobic001G375000 Sobic004G003900--Sobic008G090900 Sobic004G003900--Sobic003G128400 Sobic004G003900--Sobic009G092900 Sobic004G003900--Sobic002G181132 Sobic004G003900--Sobic003G045300 Sobic004G003900--Sobic003G162800 Sobic004G003900--Sobic006G088000 Sobic004G003900--Sobic001G003900 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic010G027200--Sobic005G184300 Sobic010G027200--Sobic004G338300 Sobic009G104700 Sobic009G104700 Sobic010G027200--Sobic009G104700
Octagon: transcription factors


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