Gene annotation
Transcriptome id Sobic.002G140000.2,Sobic.002G140000.1
Synonym HRS1, Sb02g012880, ATHRS1
Functional annotation tRNA synthetase class II core domain containing protein, expressed
UniProt A0A1B6QB52 , A0A1W0W3U6
Pfam PF00587 PF03129 PF00587
Panther DB PTHR11476 PTHR11476:SF5
NCBI CDD KOG1936; Histidyl-tRNA synthetase
KEGG Orthology K01892; HARS, histidyl-tRNA synthetase
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding GO:0005737cytoplasm


Orthologs (automatic annotation)
TAIR AT3G46100 : Histidyl-tRNA synthetase 1
RAP-DB (Rice) LOC_Os02g51830.1 : tRNA synthetase class II core domain containing protein, expressed
MaizeGDB (Corn) Zm00025a023147
Brachypodium KQJ91660
Barley HORVU2Hr1G018890.2
Wheat TraesCS2A02G530800 , TraesCS2D02G532700 , TraesCS2B02G560200
Populus PNT31253 , PNT31252


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cDNA sequences
Sobic.002G140000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
2 Sobic.007G116100 thioredoxin, putative, expressed -
3 Sobic.007G015300 calreticulin family protein, expressed -
4 Sobic.005G022800 GTP binding protein, putative, expressed -
5 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
6 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
7 Sobic.001G099000 expressed protein -
8 Sobic.001G375000 OsClp5 - Putative Clp protease homologue, expressed -
9 Sobic.001G321400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCB2, putative, expressed -
10 Sobic.004G255500 SET domain-containing protein, putative, expressed -
11 Sobic.009G251000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@SET domain containing protein, expressed -
12 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
13 Sobic.002G045700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polynucleotide phosphorylase, putative, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
14 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
15 Sobic.001G281500 OsClp11 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
16 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
17 Sobic.003G373300 DNA polymerase I, putative, expressed -
18 Sobic.001G003900 pentatricopeptide, putative, expressed -
19 Sobic.003G162800 expressed protein -
20 Sobic.007G101300 expressed protein -


Gene co-expression network
sample Sobic002G140000 Sobic002G140000 Sobic010G027200 Sobic010G027200 Sobic002G140000--Sobic010G027200 Sobic007G116100 Sobic007G116100 Sobic002G140000--Sobic007G116100 Sobic007G015300 Sobic007G015300 Sobic002G140000--Sobic007G015300 Sobic005G022800 Sobic005G022800 Sobic002G140000--Sobic005G022800 Sobic006G237100 Sobic006G237100 Sobic002G140000--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic002G140000--Sobic006G263800 Sobic001G099000 Sobic001G099000 Sobic002G140000--Sobic001G099000 Sobic001G375000 Sobic001G375000 Sobic002G140000--Sobic001G375000 Sobic001G321400 Sobic001G321400 Sobic002G140000--Sobic001G321400 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic005G184300 Sobic005G184300 Sobic010G027200--Sobic005G184300 Sobic004G338300 Sobic004G338300 Sobic010G027200--Sobic004G338300 Sobic009G104700 Sobic009G104700 Sobic010G027200--Sobic009G104700 Sobic007G116100--Sobic010G027200 Sobic001G281500 Sobic001G281500 Sobic007G116100--Sobic001G281500 Sobic007G116100--Sobic002G140000 Sobic007G116100--Sobic006G263800 Sobic007G116100--Sobic001G099000 Sobic007G116100--Sobic007G015300 Sobic007G116100--Sobic006G237100 Sobic007G116100--Sobic004G338300 Sobic007G116100--Sobic005G022800 Sobic007G015300--Sobic001G099000 Sobic002G158800 Sobic002G158800 Sobic007G015300--Sobic002G158800 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic007G015300--Sobic002G140000 Sobic007G015300--Sobic005G184300 Sobic007G015300--Sobic001G375000 Sobic007G015300--Sobic007G116100 Sobic003G128400 Sobic003G128400 Sobic007G015300--Sobic003G128400 Sobic005G022800--Sobic002G140000 Sobic005G022800--Sobic006G263800 Sobic004G255500 Sobic004G255500 Sobic005G022800--Sobic004G255500 Sobic003G373300 Sobic003G373300 Sobic005G022800--Sobic003G373300 Sobic005G197300 Sobic005G197300 Sobic005G022800--Sobic005G197300 Sobic005G022800--Sobic001G099000 Sobic005G022800--Sobic007G116100 Sobic005G022800--Sobic010G027200 Sobic008G021700 Sobic008G021700 Sobic005G022800--Sobic008G021700 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic006G237100--Sobic001G375000 Sobic002G404900 Sobic002G404900 Sobic006G237100--Sobic002G404900 Sobic006G237100--Sobic002G140000 Sobic001G161400 Sobic001G161400 Sobic006G237100--Sobic001G161400 Sobic001G437200 Sobic001G437200 Sobic006G237100--Sobic001G437200 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic006G263800--Sobic007G116100 Sobic002G190100 Sobic002G190100 Sobic006G263800--Sobic002G190100 Sobic006G263800--Sobic002G140000 Sobic006G263800--Sobic001G281500 Sobic006G263800--Sobic005G022800 Sobic006G263800--Sobic001G099000 Sobic006G263800--Sobic010G027200 Sobic006G263800--Sobic006G237100 Sobic001G120000 Sobic001G120000 Sobic006G263800--Sobic001G120000 Sobic001G099000--Sobic002G158800 Sobic001G099000--Sobic005G184300 Sobic001G099000--Sobic007G015300 Sobic002G081500 Sobic002G081500 Sobic001G099000--Sobic002G081500 Sobic001G099000--Sobic004G255500 Sobic001G099000--Sobic010G027200 Sobic002G109000 Sobic002G109000 Sobic001G099000--Sobic002G109000 Sobic001G099000--Sobic003G373300 Sobic006G166000 Sobic006G166000 Sobic001G099000--Sobic006G166000 Sobic001G375000--Sobic003G128400 Sobic003G162800 Sobic003G162800 Sobic001G375000--Sobic003G162800 Sobic006G088000 Sobic006G088000 Sobic001G375000--Sobic006G088000 Sobic004G003900 Sobic004G003900 Sobic001G375000--Sobic004G003900 Sobic003G045300 Sobic003G045300 Sobic001G375000--Sobic003G045300 Sobic001G375000--Sobic010G027200 Sobic001G448600 Sobic001G448600 Sobic001G375000--Sobic001G448600 Sobic001G375000--Sobic006G237100 Sobic002G156100 Sobic002G156100 Sobic001G375000--Sobic002G156100 Sobic001G321400--Sobic002G140000 Sobic001G321400--Sobic010G027200 Sobic001G321400--Sobic006G263800 Sobic001G321400--Sobic007G116100 Sobic001G321400--Sobic004G255500 Sobic006G281066 Sobic006G281066 Sobic001G321400--Sobic006G281066 Sobic001G321400--Sobic006G237100 Sobic001G321400--Sobic007G015300 Sobic001G395300 Sobic001G395300 Sobic001G321400--Sobic001G395300
Octagon: transcription factors


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