Gene annotation
Transcriptome id Sobic.001G321400.1,Sobic.001G321400.2,Sobic.001G321400.3
Synonym CCB2, Sb01g031180, HCF208
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
CCB2, putative, expressed
UniProt C5WUL7
Pfam PF11152
Panther DB PTHR36403
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G52110 : Protein of unknown function (DUF2930)
RAP-DB (Rice) LOC_Os10g37840.7,LOC_Os10g37840.2 : CCB2, putative, expressed
MaizeGDB (Corn) Zm00025a003081
Brachypodium KQJ97510 , KQJ97511 , KQJ97512 , KQJ97513 , KQJ97514 , PNT67747
Barley HORVU1Hr1G048720.18 , HORVU1Hr1G048720.14 , HORVU1Hr1G048720.15 , HORVU1Hr1G048720.16 , HORVU1Hr1G048720.17 , HORVU1Hr1G048720.10 , HORVU1Hr1G048720.11 , HORVU1Hr1G048720.12 , HORVU1Hr1G048720.13 , HORVU1Hr1G048720.6 , HORVU1Hr1G048720.7 , HORVU1Hr1G048720.4 , HORVU1Hr1G048720.5 , HORVU1Hr1G048720.2 , HORVU1Hr1G048720.3 , HORVU1Hr1G048720.1 , HORVU1Hr1G048720.8 , HORVU1Hr1G048720.9
Wheat TraesCS1D02G187800 , TraesCS1B02G196300 , TraesCS1A02G188600 , TraesCS1A02G188600 , TraesCS1D02G187800
Populus -


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cDNA sequences
Sobic.001G321400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
2 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
3 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
4 Sobic.007G116100 thioredoxin, putative, expressed -
5 Sobic.004G255500 SET domain-containing protein, putative, expressed -
6 Sobic.006G281066 - -
7 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
8 Sobic.007G015300 calreticulin family protein, expressed -
9 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.002G124100 - -
11 Sobic.004G338300 rho termination factor, N-terminal domain containing protein, expressed -
12 Sobic.005G022800 GTP binding protein, putative, expressed -
13 Sobic.002G045700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polynucleotide phosphorylase, putative, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
14 Sobic.002G190100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G236300 tat pathway signal sequence family protein, expressed -
16 Sobic.001G099000 expressed protein -
17 Sobic.003G162800 expressed protein -
18 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
19 Sobic.001G448600 GTP-binding protein, putative, expressed K03978: GTP-binding protein
20 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein


Gene co-expression network
sample Sobic001G321400 Sobic001G321400 Sobic002G140000 Sobic002G140000 Sobic001G321400--Sobic002G140000 Sobic010G027200 Sobic010G027200 Sobic001G321400--Sobic010G027200 Sobic006G263800 Sobic006G263800 Sobic001G321400--Sobic006G263800 Sobic007G116100 Sobic007G116100 Sobic001G321400--Sobic007G116100 Sobic004G255500 Sobic004G255500 Sobic001G321400--Sobic004G255500 Sobic006G281066 Sobic006G281066 Sobic001G321400--Sobic006G281066 Sobic006G237100 Sobic006G237100 Sobic001G321400--Sobic006G237100 Sobic007G015300 Sobic007G015300 Sobic001G321400--Sobic007G015300 Sobic001G395300 Sobic001G395300 Sobic001G321400--Sobic001G395300 Sobic002G140000--Sobic010G027200 Sobic002G140000--Sobic007G116100 Sobic002G140000--Sobic007G015300 Sobic005G022800 Sobic005G022800 Sobic002G140000--Sobic005G022800 Sobic002G140000--Sobic006G237100 Sobic002G140000--Sobic006G263800 Sobic001G099000 Sobic001G099000 Sobic002G140000--Sobic001G099000 Sobic001G375000 Sobic001G375000 Sobic002G140000--Sobic001G375000 Sobic002G140000--Sobic001G321400 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic005G184300 Sobic005G184300 Sobic010G027200--Sobic005G184300 Sobic004G338300 Sobic004G338300 Sobic010G027200--Sobic004G338300 Sobic009G104700 Sobic009G104700 Sobic010G027200--Sobic009G104700 Sobic006G263800--Sobic007G116100 Sobic002G190100 Sobic002G190100 Sobic006G263800--Sobic002G190100 Sobic006G263800--Sobic002G140000 Sobic001G281500 Sobic001G281500 Sobic006G263800--Sobic001G281500 Sobic006G263800--Sobic005G022800 Sobic006G263800--Sobic001G099000 Sobic006G263800--Sobic010G027200 Sobic006G263800--Sobic006G237100 Sobic001G120000 Sobic001G120000 Sobic006G263800--Sobic001G120000 Sobic007G116100--Sobic010G027200 Sobic007G116100--Sobic001G281500 Sobic007G116100--Sobic002G140000 Sobic007G116100--Sobic006G263800 Sobic007G116100--Sobic001G099000 Sobic007G116100--Sobic007G015300 Sobic007G116100--Sobic006G237100 Sobic007G116100--Sobic004G338300 Sobic007G116100--Sobic005G022800 Sobic004G255500--Sobic001G099000 Sobic001G448600 Sobic001G448600 Sobic004G255500--Sobic001G448600 Sobic004G255500--Sobic005G022800 Sobic004G255500--Sobic001G281500 Sobic002G013700 Sobic002G013700 Sobic004G255500--Sobic002G013700 Sobic004G255500--Sobic010G027200 Sobic004G255500--Sobic005G184300 Sobic004G255500--Sobic002G140000 Sobic004G255500--Sobic007G015300 Sobic004G214400 Sobic004G214400 Sobic006G281066--Sobic004G214400 Sobic001G104300 Sobic001G104300 Sobic006G281066--Sobic001G104300 Sobic001G543700 Sobic001G543700 Sobic006G281066--Sobic001G543700 Sobic002G363500 Sobic002G363500 Sobic006G281066--Sobic002G363500 Sobic006G281066--Sobic001G395300 Sobic003G236300 Sobic003G236300 Sobic006G281066--Sobic003G236300 Sobic006G281066--Sobic010G027200 Sobic006G281066--Sobic002G140000 Sobic006G281066--Sobic001G321400 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic006G237100--Sobic001G375000 Sobic002G404900 Sobic002G404900 Sobic006G237100--Sobic002G404900 Sobic006G237100--Sobic002G140000 Sobic001G161400 Sobic001G161400 Sobic006G237100--Sobic001G161400 Sobic001G437200 Sobic001G437200 Sobic006G237100--Sobic001G437200 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic007G015300--Sobic001G099000 Sobic002G158800 Sobic002G158800 Sobic007G015300--Sobic002G158800 Sobic007G015300--Sobic004G338300 Sobic007G015300--Sobic010G027200 Sobic007G015300--Sobic002G140000 Sobic007G015300--Sobic005G184300 Sobic007G015300--Sobic001G375000 Sobic007G015300--Sobic007G116100 Sobic003G128400 Sobic003G128400 Sobic007G015300--Sobic003G128400 Sobic009G137000 Sobic009G137000 Sobic001G395300--Sobic009G137000 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic001G395300--Sobic006G237100 Sobic001G395300--Sobic006G263800 Sobic001G395300--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G395300--Sobic006G204100 Sobic001G395300--Sobic007G116100 Sobic001G395300--Sobic010G027200
Octagon: transcription factors


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