Gene annotation
Transcriptome id Sobic.001G395300.1
Synonym NCLPP1, NCLPP5, CLPP5, Sb01g037430
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsClp4 - Putative Clp protease homologue, expressed
UniProt C5WMG5
Pfam PF00574
Panther DB PTHR10381 PTHR10381:SF12
NCBI CDD KOG0840; ATP-dependent Clp protease, proteolytic subunit
KEGG Orthology K01358; clpP, ATP-dependent Clp protease, protease subunit
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G02560 : nuclear encoded CLP protease 5
RAP-DB (Rice) LOC_Os03g19510.1 : OsClp4 - Putative Clp protease homologue, expressed
MaizeGDB (Corn) Zm00025a052552 , Zm00025a002145
Brachypodium KQK21992
Barley HORVU4Hr1G053660.1
Wheat TraesCS4D02G184400 , TraesCS4B02G181600 , TraesCS4A02G121500
Populus -


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cDNA sequences
Sobic.001G395300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
2 Sobic.002G404900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA pseudouridine synthase, putative, expressed -
3 Sobic.001G228300 SAP domain containing protein, expressed -
4 Sobic.006G237100 amidase, putative, expressed K02433: gatA, aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A
5 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
6 Sobic.002G140000 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
7 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
8 Sobic.007G116100 thioredoxin, putative, expressed -
9 Sobic.010G027200 OsClp9 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
10 Sobic.006G281066 - -
11 Sobic.002G124100 - -
12 Sobic.001G161400 single-stranded DNA-binding protein, putative, expressed -
13 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
14 Sobic.003G039300 expressed protein -
15 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
16 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
17 Sobic.001G437200 ATP-dependent Clp protease ATP-binding subunit, putative, expressed -
18 Sobic.003G392000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PDE312/PTAC10, putative, expressed -
19 Sobic.001G138000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thiamine biosynthesis protein thiC, putative, expressed K03147: phosphomethylpyrimidine synthase
20 Sobic.005G009300 expressed protein -


Gene co-expression network
sample Sobic001G395300 Sobic001G395300 Sobic009G137000 Sobic009G137000 Sobic001G395300--Sobic009G137000 Sobic002G404900 Sobic002G404900 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic006G237100 Sobic006G237100 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic002G140000 Sobic002G140000 Sobic001G395300--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G395300--Sobic006G204100 Sobic007G116100 Sobic007G116100 Sobic001G395300--Sobic007G116100 Sobic010G027200 Sobic010G027200 Sobic001G395300--Sobic010G027200 Sobic009G137000--Sobic001G395300 Sobic009G137000--Sobic002G404900 Sobic003G039300 Sobic003G039300 Sobic009G137000--Sobic003G039300 Sobic002G243650 Sobic002G243650 Sobic009G137000--Sobic002G243650 Sobic009G233800 Sobic009G233800 Sobic009G137000--Sobic009G233800 Sobic003G222600 Sobic003G222600 Sobic009G137000--Sobic003G222600 Sobic006G110200 Sobic006G110200 Sobic009G137000--Sobic006G110200 Sobic009G137000--Sobic006G237100 Sobic003G030400 Sobic003G030400 Sobic009G137000--Sobic003G030400 Sobic002G404900--Sobic006G237100 Sobic002G404900--Sobic009G137000 Sobic002G404900--Sobic001G395300 Sobic001G437200 Sobic001G437200 Sobic002G404900--Sobic001G437200 Sobic009G036300 Sobic009G036300 Sobic002G404900--Sobic009G036300 Sobic001G161400 Sobic001G161400 Sobic002G404900--Sobic001G161400 Sobic005G009300 Sobic005G009300 Sobic002G404900--Sobic005G009300 Sobic001G445200 Sobic001G445200 Sobic002G404900--Sobic001G445200 Sobic002G404900--Sobic006G204100 Sobic001G228300--Sobic001G395300 Sobic002G045700 Sobic002G045700 Sobic001G228300--Sobic002G045700 Sobic001G138000 Sobic001G138000 Sobic001G228300--Sobic001G138000 Sobic001G228300--Sobic006G263800 Sobic003G392000 Sobic003G392000 Sobic001G228300--Sobic003G392000 Sobic001G228300--Sobic007G116100 Sobic001G228300--Sobic002G140000 Sobic003G283100 Sobic003G283100 Sobic001G228300--Sobic003G283100 Sobic001G228300--Sobic006G110200 Sobic001G281500 Sobic001G281500 Sobic006G237100--Sobic001G281500 Sobic006G237100--Sobic010G027200 Sobic001G375000 Sobic001G375000 Sobic006G237100--Sobic001G375000 Sobic006G237100--Sobic002G404900 Sobic006G237100--Sobic002G140000 Sobic006G237100--Sobic001G161400 Sobic006G237100--Sobic001G437200 Sobic006G237100--Sobic007G116100 Sobic003G310100 Sobic003G310100 Sobic006G237100--Sobic003G310100 Sobic006G263800--Sobic007G116100 Sobic002G190100 Sobic002G190100 Sobic006G263800--Sobic002G190100 Sobic006G263800--Sobic002G140000 Sobic006G263800--Sobic001G281500 Sobic005G022800 Sobic005G022800 Sobic006G263800--Sobic005G022800 Sobic001G099000 Sobic001G099000 Sobic006G263800--Sobic001G099000 Sobic006G263800--Sobic010G027200 Sobic006G263800--Sobic006G237100 Sobic001G120000 Sobic001G120000 Sobic006G263800--Sobic001G120000 Sobic002G140000--Sobic010G027200 Sobic002G140000--Sobic007G116100 Sobic007G015300 Sobic007G015300 Sobic002G140000--Sobic007G015300 Sobic002G140000--Sobic005G022800 Sobic002G140000--Sobic006G237100 Sobic002G140000--Sobic006G263800 Sobic002G140000--Sobic001G099000 Sobic002G140000--Sobic001G375000 Sobic001G321400 Sobic001G321400 Sobic002G140000--Sobic001G321400 Sobic010G074200 Sobic010G074200 Sobic006G204100--Sobic010G074200 Sobic008G072300 Sobic008G072300 Sobic006G204100--Sobic008G072300 Sobic001G388400 Sobic001G388400 Sobic006G204100--Sobic001G388400 Sobic009G234200 Sobic009G234200 Sobic006G204100--Sobic009G234200 Sobic003G330100 Sobic003G330100 Sobic006G204100--Sobic003G330100 Sobic006G204100--Sobic009G233800 Sobic010G028000 Sobic010G028000 Sobic006G204100--Sobic010G028000 Sobic007G227600 Sobic007G227600 Sobic006G204100--Sobic007G227600 Sobic004G250200 Sobic004G250200 Sobic006G204100--Sobic004G250200 Sobic007G116100--Sobic010G027200 Sobic007G116100--Sobic001G281500 Sobic007G116100--Sobic002G140000 Sobic007G116100--Sobic006G263800 Sobic007G116100--Sobic001G099000 Sobic007G116100--Sobic007G015300 Sobic007G116100--Sobic006G237100 Sobic004G338300 Sobic004G338300 Sobic007G116100--Sobic004G338300 Sobic007G116100--Sobic005G022800 Sobic010G027200--Sobic002G140000 Sobic010G027200--Sobic001G375000 Sobic010G027200--Sobic001G099000 Sobic010G027200--Sobic007G116100 Sobic010G027200--Sobic006G237100 Sobic010G027200--Sobic007G015300 Sobic005G184300 Sobic005G184300 Sobic010G027200--Sobic005G184300 Sobic010G027200--Sobic004G338300 Sobic009G104700 Sobic009G104700 Sobic010G027200--Sobic009G104700
Octagon: transcription factors


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