Gene annotation
Transcriptome id Sobic.001G138000.1
Synonym PY, THIC, Sb01g012050
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
thiamine biosynthesis protein thiC, putative, expressed
UniProt C5WPN8
Pfam PF01964
Panther DB PTHR30557 PTHR30557:SF1
NCBI CDD -
KEGG Orthology K03147; phosphomethylpyrimidine synthase
Gene Ontology GO:0009228; thiamine biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G29630 : thiaminC
RAP-DB (Rice) LOC_Os03g47610.6 : thiamine biosynthesis protein thiC, putative, expressed
MaizeGDB (Corn) Zm00025a007477
Brachypodium PNT74324 , PNT74320 , PNT74321 , PNT74322 , PNT74323 , KQK13796 , PNT74317 , PNT74319 , PNT74318
Barley HORVU4Hr1G003580.2 , HORVU4Hr1G003580.3 , HORVU4Hr1G003580.1 , HORVU4Hr1G003580.6 , HORVU4Hr1G003580.7 , HORVU4Hr1G003580.4 , HORVU4Hr1G003580.5 , HORVU4Hr1G003580.8 , HORVU4Hr1G003580.9 , HORVU4Hr1G003580.24 , HORVU4Hr1G003580.21 , HORVU4Hr1G003580.20 , HORVU4Hr1G003580.23 , HORVU4Hr1G003580.22 , HORVU4Hr1G003580.10 , HORVU4Hr1G003580.11 , HORVU4Hr1G003580.12 , HORVU4Hr1G003580.13 , HORVU4Hr1G003580.14 , HORVU4Hr1G003580.15 , HORVU4Hr1G003580.16 , HORVU4Hr1G003580.17 , HORVU4Hr1G003580.18 , HORVU4Hr1G003580.19
Wheat TraesCS4B02G023800 , TraesCS4D02G021400 , TraesCS4A02G290400
Populus PNT56498 , PNT56499 , PNT19521 , PNT19520 , PNT56492 , PNT56493 , PNT56490 , PNT56491 , PNT56496 , PNT56497 , PNT56494 , PNT56495 , PNT19518 , PNT19519


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cDNA sequences
Sobic.001G138000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G228300 SAP domain containing protein, expressed -
2 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
3 Sobic.004G170600 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.001G437801 - K04077: groEL, chaperonin GroEL
5 Sobic.006G263800 HAD-superfamily hydrolase subfamily IA, variant 3, putative, expressed -
6 Sobic.003G392000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PDE312/PTAC10, putative, expressed -
7 Sobic.009G233800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf23, putative, expressed -
8 Sobic.005G142900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.001G120000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
10 Sobic.010G074200 - -
11 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
12 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
13 Sobic.006G204100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
14 Sobic.007G060900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@disease resistance protein RPM1, putative, expressed -
15 Sobic.001G172300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinase, pfkB family, putative, expressed -
16 Sobic.006G114300 pentatricopeptide, putative, expressed -
17 Sobic.003G136400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)
18 Sobic.004G253800 - -
19 Sobic.004G070200 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metallo-beta-lactamase, putative, expressed -
20 Sobic.003G283100 OsSub3 - Putative Subtilisin homologue, expressed -


Gene co-expression network
sample Sobic001G138000 Sobic001G138000 Sobic001G228300 Sobic001G228300 Sobic001G138000--Sobic001G228300 Sobic001G395300 Sobic001G395300 Sobic001G138000--Sobic001G395300 Sobic004G170600 Sobic004G170600 Sobic001G138000--Sobic004G170600 Sobic001G437801 Sobic001G437801 Sobic001G138000--Sobic001G437801 Sobic006G263800 Sobic006G263800 Sobic001G138000--Sobic006G263800 Sobic003G392000 Sobic003G392000 Sobic001G138000--Sobic003G392000 Sobic009G233800 Sobic009G233800 Sobic001G138000--Sobic009G233800 Sobic005G142900 Sobic005G142900 Sobic001G138000--Sobic005G142900 Sobic001G120000 Sobic001G120000 Sobic001G138000--Sobic001G120000 Sobic001G228300--Sobic001G395300 Sobic002G045700 Sobic002G045700 Sobic001G228300--Sobic002G045700 Sobic001G228300--Sobic001G138000 Sobic001G228300--Sobic006G263800 Sobic001G228300--Sobic003G392000 Sobic007G116100 Sobic007G116100 Sobic001G228300--Sobic007G116100 Sobic002G140000 Sobic002G140000 Sobic001G228300--Sobic002G140000 Sobic003G283100 Sobic003G283100 Sobic001G228300--Sobic003G283100 Sobic006G110200 Sobic006G110200 Sobic001G228300--Sobic006G110200 Sobic009G137000 Sobic009G137000 Sobic001G395300--Sobic009G137000 Sobic002G404900 Sobic002G404900 Sobic001G395300--Sobic002G404900 Sobic001G395300--Sobic001G228300 Sobic006G237100 Sobic006G237100 Sobic001G395300--Sobic006G237100 Sobic001G395300--Sobic006G263800 Sobic001G395300--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G395300--Sobic006G204100 Sobic001G395300--Sobic007G116100 Sobic010G027200 Sobic010G027200 Sobic001G395300--Sobic010G027200 Sobic009G056400 Sobic009G056400 Sobic004G170600--Sobic009G056400 Sobic004G170600--Sobic001G138000 Sobic004G170600--Sobic006G263800 Sobic002G190100 Sobic002G190100 Sobic004G170600--Sobic002G190100 Sobic009G196200 Sobic009G196200 Sobic004G170600--Sobic009G196200 Sobic002G064400 Sobic002G064400 Sobic004G170600--Sobic002G064400 Sobic001G142400 Sobic001G142400 Sobic004G170600--Sobic001G142400 Sobic004G006100 Sobic004G006100 Sobic004G170600--Sobic004G006100 Sobic004G170600--Sobic001G120000 Sobic010G099300 Sobic010G099300 Sobic001G437801--Sobic010G099300 Sobic001G040600 Sobic001G040600 Sobic001G437801--Sobic001G040600 Sobic001G437801--Sobic001G395300 Sobic001G437801--Sobic001G138000 Sobic007G182600 Sobic007G182600 Sobic001G437801--Sobic007G182600 Sobic003G030400 Sobic003G030400 Sobic001G437801--Sobic003G030400 Sobic001G368300 Sobic001G368300 Sobic001G437801--Sobic001G368300 Sobic001G437801--Sobic001G228300 Sobic001G049800 Sobic001G049800 Sobic001G437801--Sobic001G049800 Sobic006G263800--Sobic007G116100 Sobic006G263800--Sobic002G190100 Sobic006G263800--Sobic002G140000 Sobic001G281500 Sobic001G281500 Sobic006G263800--Sobic001G281500 Sobic005G022800 Sobic005G022800 Sobic006G263800--Sobic005G022800 Sobic001G099000 Sobic001G099000 Sobic006G263800--Sobic001G099000 Sobic006G263800--Sobic010G027200 Sobic006G263800--Sobic006G237100 Sobic006G263800--Sobic001G120000 Sobic001G172300 Sobic001G172300 Sobic003G392000--Sobic001G172300 Sobic002G190800 Sobic002G190800 Sobic003G392000--Sobic002G190800 Sobic003G392000--Sobic001G228300 Sobic001G383900 Sobic001G383900 Sobic003G392000--Sobic001G383900 Sobic010G012900 Sobic010G012900 Sobic003G392000--Sobic010G012900 Sobic003G392000--Sobic001G120000 Sobic001G188600 Sobic001G188600 Sobic003G392000--Sobic001G188600 Sobic007G034500 Sobic007G034500 Sobic003G392000--Sobic007G034500 Sobic004G253800 Sobic004G253800 Sobic003G392000--Sobic004G253800 Sobic010G074200 Sobic010G074200 Sobic009G233800--Sobic010G074200 Sobic009G233800--Sobic006G204100 Sobic001G388400 Sobic001G388400 Sobic009G233800--Sobic001G388400 Sobic004G055600 Sobic004G055600 Sobic009G233800--Sobic004G055600 Sobic009G233800--Sobic003G030400 Sobic010G074100 Sobic010G074100 Sobic009G233800--Sobic010G074100 Sobic009G233800--Sobic009G137000 Sobic001G076200 Sobic001G076200 Sobic009G233800--Sobic001G076200 Sobic010G028000 Sobic010G028000 Sobic009G233800--Sobic010G028000 Sobic005G142900--Sobic001G228300 Sobic001G275800 Sobic001G275800 Sobic005G142900--Sobic001G275800 Sobic001G061600 Sobic001G061600 Sobic005G142900--Sobic001G061600 Sobic005G142900--Sobic003G283100 Sobic001G164200 Sobic001G164200 Sobic005G142900--Sobic001G164200 Sobic005G142900--Sobic001G138000 Sobic005G142900--Sobic007G182600 Sobic005G218100 Sobic005G218100 Sobic005G142900--Sobic005G218100 Sobic001G182300 Sobic001G182300 Sobic005G142900--Sobic001G182300 Sobic004G044000 Sobic004G044000 Sobic001G120000--Sobic004G044000 Sobic004G191200 Sobic004G191200 Sobic001G120000--Sobic004G191200 Sobic001G120000--Sobic002G190800 Sobic001G120000--Sobic006G263800 Sobic001G120000--Sobic002G190100 Sobic004G017200 Sobic004G017200 Sobic001G120000--Sobic004G017200 Sobic002G305700 Sobic002G305700 Sobic001G120000--Sobic002G305700 Sobic001G027600 Sobic001G027600 Sobic001G120000--Sobic001G027600 Sobic001G255400 Sobic001G255400 Sobic001G120000--Sobic001G255400
Octagon: transcription factors


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