Gene annotation
Transcriptome id Sobic.005G142900.1,Sobic.005G142900.2
Synonym Sb05g020820
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt A0A1B6PSG3 , A0A1B6PSF9
Pfam -
Panther DB PTHR13343 PTHR13343:SF13
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G24060 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os11g34130.1 : expressed protein
MaizeGDB (Corn) Zm00025a033552
Brachypodium KQJ88301 , KQJ88300 , PNT63509 , KQJ88298
Barley -
Wheat TraesCS5D02G044900 , TraesCS5B02G038400 , TraesCS5A02G037400
Populus -


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cDNA sequences
Sobic.005G142900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G228300 SAP domain containing protein, expressed -
2 Sobic.001G275800 peptide transporter PTR2, putative, expressed -
3 Sobic.001G061600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidase M50, mammalian sterol-regulatory element binding protein, putative, expressed -
4 Sobic.003G283100 OsSub3 - Putative Subtilisin homologue, expressed -
5 Sobic.001G164200 cytochrome P450, putative, expressed -
6 Sobic.001G138000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@thiamine biosynthesis protein thiC, putative, expressed K03147: phosphomethylpyrimidine synthase
7 Sobic.007G182600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
8 Sobic.005G218100 Cyclopropane-fatty-acyl-phospholipid synthase, putative, expressed -
9 Sobic.001G182300 GDSL-like lipase/acylhydrolase, putative, expressed -
10 Sobic.004G170600 GDSL-like lipase/acylhydrolase, putative, expressed -
11 Sobic.003G262650 - -
12 Sobic.002G094500 cytochrome P450, putative, expressed -
13 Sobic.003G176200 - -
14 Sobic.002G045700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polynucleotide phosphorylase, putative, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
15 Sobic.001G120000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
16 Sobic.008G130700 expressed protein -
17 Sobic.003G392000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PDE312/PTAC10, putative, expressed -
18 Sobic.002G201100 ZF-HD protein dimerisation region containing protein, expressed -
19 Sobic.007G154800 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
20 Sobic.008G021700 peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -


Gene co-expression network
sample Sobic005G142900 Sobic005G142900 Sobic001G228300 Sobic001G228300 Sobic005G142900--Sobic001G228300 Sobic001G275800 Sobic001G275800 Sobic005G142900--Sobic001G275800 Sobic001G061600 Sobic001G061600 Sobic005G142900--Sobic001G061600 Sobic003G283100 Sobic003G283100 Sobic005G142900--Sobic003G283100 Sobic001G164200 Sobic001G164200 Sobic005G142900--Sobic001G164200 Sobic001G138000 Sobic001G138000 Sobic005G142900--Sobic001G138000 Sobic007G182600 Sobic007G182600 Sobic005G142900--Sobic007G182600 Sobic005G218100 Sobic005G218100 Sobic005G142900--Sobic005G218100 Sobic001G182300 Sobic001G182300 Sobic005G142900--Sobic001G182300 Sobic001G395300 Sobic001G395300 Sobic001G228300--Sobic001G395300 Sobic002G045700 Sobic002G045700 Sobic001G228300--Sobic002G045700 Sobic001G228300--Sobic001G138000 Sobic006G263800 Sobic006G263800 Sobic001G228300--Sobic006G263800 Sobic003G392000 Sobic003G392000 Sobic001G228300--Sobic003G392000 Sobic007G116100 Sobic007G116100 Sobic001G228300--Sobic007G116100 Sobic002G140000 Sobic002G140000 Sobic001G228300--Sobic002G140000 Sobic001G228300--Sobic003G283100 Sobic006G110200 Sobic006G110200 Sobic001G228300--Sobic006G110200 Sobic005G203600 Sobic005G203600 Sobic001G275800--Sobic005G203600 Sobic007G090415 Sobic007G090415 Sobic001G275800--Sobic007G090415 Sobic007G123200 Sobic007G123200 Sobic001G275800--Sobic007G123200 Sobic001G229500 Sobic001G229500 Sobic001G275800--Sobic001G229500 Sobic008G130700 Sobic008G130700 Sobic001G275800--Sobic008G130700 Sobic005G020200 Sobic005G020200 Sobic001G275800--Sobic005G020200 Sobic001G275800--Sobic005G218100 Sobic003G176200 Sobic003G176200 Sobic001G275800--Sobic003G176200 Sobic006G001400 Sobic006G001400 Sobic001G275800--Sobic006G001400 Sobic004G151900 Sobic004G151900 Sobic001G061600--Sobic004G151900 Sobic003G042100 Sobic003G042100 Sobic001G061600--Sobic003G042100 Sobic006G062400 Sobic006G062400 Sobic001G061600--Sobic006G062400 Sobic007G154800 Sobic007G154800 Sobic001G061600--Sobic007G154800 Sobic001G061600--Sobic007G182600 Sobic008G021700 Sobic008G021700 Sobic001G061600--Sobic008G021700 Sobic001G061600--Sobic001G164200 Sobic003G029300 Sobic003G029300 Sobic001G061600--Sobic003G029300 Sobic002G232500 Sobic002G232500 Sobic001G061600--Sobic002G232500 Sobic003G283100--Sobic001G228300 Sobic003G283100--Sobic005G142900 Sobic001G120000 Sobic001G120000 Sobic003G283100--Sobic001G120000 Sobic003G283100--Sobic006G263800 Sobic001G255400 Sobic001G255400 Sobic003G283100--Sobic001G255400 Sobic003G283100--Sobic003G392000 Sobic010G270900 Sobic010G270900 Sobic003G283100--Sobic010G270900 Sobic004G170600 Sobic004G170600 Sobic003G283100--Sobic004G170600 Sobic004G055600 Sobic004G055600 Sobic003G283100--Sobic004G055600 Sobic008G013900 Sobic008G013900 Sobic001G164200--Sobic008G013900 Sobic001G164200--Sobic001G182300 Sobic008G049000 Sobic008G049000 Sobic001G164200--Sobic008G049000 Sobic002G094500 Sobic002G094500 Sobic001G164200--Sobic002G094500 Sobic007G129401 Sobic007G129401 Sobic001G164200--Sobic007G129401 Sobic003G219000 Sobic003G219000 Sobic001G164200--Sobic003G219000 Sobic009G026400 Sobic009G026400 Sobic001G164200--Sobic009G026400 Sobic002G060500 Sobic002G060500 Sobic001G164200--Sobic002G060500 Sobic005G043400 Sobic005G043400 Sobic001G164200--Sobic005G043400 Sobic001G138000--Sobic001G228300 Sobic001G138000--Sobic001G395300 Sobic001G138000--Sobic004G170600 Sobic001G437801 Sobic001G437801 Sobic001G138000--Sobic001G437801 Sobic001G138000--Sobic006G263800 Sobic001G138000--Sobic003G392000 Sobic009G233800 Sobic009G233800 Sobic001G138000--Sobic009G233800 Sobic001G138000--Sobic005G142900 Sobic001G138000--Sobic001G120000 Sobic008G100400 Sobic008G100400 Sobic007G182600--Sobic008G100400 Sobic010G099300 Sobic010G099300 Sobic007G182600--Sobic010G099300 Sobic007G182600--Sobic001G061600 Sobic001G081300 Sobic001G081300 Sobic007G182600--Sobic001G081300 Sobic001G040600 Sobic001G040600 Sobic007G182600--Sobic001G040600 Sobic008G147400 Sobic008G147400 Sobic007G182600--Sobic008G147400 Sobic003G051500 Sobic003G051500 Sobic007G182600--Sobic003G051500 Sobic010G252000 Sobic010G252000 Sobic007G182600--Sobic010G252000 Sobic002G380100 Sobic002G380100 Sobic007G182600--Sobic002G380100 Sobic002G023400 Sobic002G023400 Sobic005G218100--Sobic002G023400 Sobic005G218100--Sobic001G275800 Sobic005G218100--Sobic001G229500 Sobic002G007600 Sobic002G007600 Sobic005G218100--Sobic002G007600 Sobic008G167100 Sobic008G167100 Sobic005G218100--Sobic008G167100 Sobic005G162300 Sobic005G162300 Sobic005G218100--Sobic005G162300 Sobic001G166000 Sobic001G166000 Sobic005G218100--Sobic001G166000 Sobic005G218100--Sobic005G142900 Sobic002G017000 Sobic002G017000 Sobic005G218100--Sobic002G017000 Sobic001G182300--Sobic008G013900 Sobic001G182300--Sobic003G219000 Sobic001G182300--Sobic001G164200 Sobic001G182300--Sobic002G094500 Sobic001G182300--Sobic008G049000 Sobic008G124100 Sobic008G124100 Sobic001G182300--Sobic008G124100 Sobic001G182300--Sobic007G129401 Sobic007G066050 Sobic007G066050 Sobic001G182300--Sobic007G066050 Sobic001G182300--Sobic009G026400
Octagon: transcription factors


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