Gene annotation
Transcriptome id Sobic.003G392000.1
Synonym Sb03g042950, PDE312, PTAC10
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
PDE312/PTAC10, putative, expressed
UniProt A0A1W0W132
Pfam -
Panther DB PTHR36371
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G48500 : Nucleic acid-binding, OB-fold-like protein
RAP-DB (Rice) LOC_Os01g67570.1 : PDE312/PTAC10, putative, expressed
MaizeGDB (Corn) Zm00025a039437
Brachypodium PNT73400
Barley HORVU3Hr1G088970.6 , HORVU3Hr1G088970.10 , HORVU3Hr1G088970.5 , HORVU3Hr1G088970.7 , HORVU3Hr1G088970.1 , HORVU3Hr1G088970.3 , HORVU3Hr1G088970.2 , HORVU3Hr1G088970.9 , HORVU3Hr1G088970.8 , HORVU3Hr1G088970.11
Wheat TraesCS3B02G425900 , TraesCS3D02G387600 , TraesCS3A02G393900
Populus -


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cDNA sequences
Sobic.003G392000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G172300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@kinase, pfkB family, putative, expressed -
2 Sobic.002G190800 expressed protein -
3 Sobic.001G228300 SAP domain containing protein, expressed -
4 Sobic.001G383900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.010G012900 superoxide dismutase, chloroplast, putative, expressed K04564: superoxide dismutase, Fe-Mn family
6 Sobic.001G120000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, FKBP-type, putative, expressed -
7 Sobic.001G188600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Rf1, mitochondrial precursor, putative, expressed -
8 Sobic.007G034500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DAG protein, chloroplast precursor, putative, expressed -
9 Sobic.004G253800 - -
10 Sobic.004G017200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
11 Sobic.001G027600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribosomal L18p/L5e family protein, putative, expressed K02881: RP-L18, MRPL18, large subunit ribosomal protein L18
12 Sobic.004G044000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@EMB1303, putative, expressed -
13 Sobic.002G045700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@polynucleotide phosphorylase, putative, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
14 Sobic.004G191200 PsbQ-like protein 1(PubMedID : 26186930)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxygen evolving enhancer protein 3, identical, putative, expressed K08901: photosystem II oxygen-evolving enhancer protein 3
15 Sobic.001G357200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed K11294: NCL, nucleolin
16 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
17 Sobic.001G347800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Homologous to Arabidopsis heme oxygenase 1 (AtHO1)(PubMedID : 11402195)@heme oxygenase 2, putative, expressed -
18 Sobic.001G427000 ribosomal protein L4, putative, expressed K02926: RP-L4, MRPL4, large subunit ribosomal protein L4
19 Sobic.004G001200 GDSL-like lipase/acylhydrolase, putative, expressed -
20 Sobic.009G098100 T-complex protein, putative, expressed -


Gene co-expression network
sample Sobic003G392000 Sobic003G392000 Sobic001G172300 Sobic001G172300 Sobic003G392000--Sobic001G172300 Sobic002G190800 Sobic002G190800 Sobic003G392000--Sobic002G190800 Sobic001G228300 Sobic001G228300 Sobic003G392000--Sobic001G228300 Sobic001G383900 Sobic001G383900 Sobic003G392000--Sobic001G383900 Sobic010G012900 Sobic010G012900 Sobic003G392000--Sobic010G012900 Sobic001G120000 Sobic001G120000 Sobic003G392000--Sobic001G120000 Sobic001G188600 Sobic001G188600 Sobic003G392000--Sobic001G188600 Sobic007G034500 Sobic007G034500 Sobic003G392000--Sobic007G034500 Sobic004G253800 Sobic004G253800 Sobic003G392000--Sobic004G253800 Sobic001G172300--Sobic010G012900 Sobic001G347800 Sobic001G347800 Sobic001G172300--Sobic001G347800 Sobic001G172300--Sobic003G392000 Sobic001G172300--Sobic001G188600 Sobic001G172300--Sobic002G190800 Sobic006G114300 Sobic006G114300 Sobic001G172300--Sobic006G114300 Sobic002G360200 Sobic002G360200 Sobic001G172300--Sobic002G360200 Sobic001G357200 Sobic001G357200 Sobic001G172300--Sobic001G357200 Sobic001G172300--Sobic004G253800 Sobic004G044000 Sobic004G044000 Sobic002G190800--Sobic004G044000 Sobic002G190800--Sobic010G012900 Sobic002G190800--Sobic001G172300 Sobic002G190800--Sobic007G034500 Sobic002G190800--Sobic001G383900 Sobic002G190800--Sobic003G392000 Sobic002G190800--Sobic001G120000 Sobic002G190800--Sobic001G357200 Sobic002G190800--Sobic001G188600 Sobic001G395300 Sobic001G395300 Sobic001G228300--Sobic001G395300 Sobic002G045700 Sobic002G045700 Sobic001G228300--Sobic002G045700 Sobic001G138000 Sobic001G138000 Sobic001G228300--Sobic001G138000 Sobic006G263800 Sobic006G263800 Sobic001G228300--Sobic006G263800 Sobic001G228300--Sobic003G392000 Sobic007G116100 Sobic007G116100 Sobic001G228300--Sobic007G116100 Sobic002G140000 Sobic002G140000 Sobic001G228300--Sobic002G140000 Sobic003G283100 Sobic003G283100 Sobic001G228300--Sobic003G283100 Sobic006G110200 Sobic006G110200 Sobic001G228300--Sobic006G110200 Sobic001G453300 Sobic001G453300 Sobic001G383900--Sobic001G453300 Sobic001G027600 Sobic001G027600 Sobic001G383900--Sobic001G027600 Sobic001G076500 Sobic001G076500 Sobic001G383900--Sobic001G076500 Sobic001G383900--Sobic004G044000 Sobic009G098100 Sobic009G098100 Sobic001G383900--Sobic009G098100 Sobic003G132600 Sobic003G132600 Sobic001G383900--Sobic003G132600 Sobic001G427000 Sobic001G427000 Sobic001G383900--Sobic001G427000 Sobic001G391400 Sobic001G391400 Sobic001G383900--Sobic001G391400 Sobic009G001500 Sobic009G001500 Sobic001G383900--Sobic009G001500 Sobic010G012900--Sobic001G188600 Sobic010G012900--Sobic001G357200 Sobic010G011200 Sobic010G011200 Sobic010G012900--Sobic010G011200 Sobic010G012900--Sobic001G383900 Sobic010G012900--Sobic001G172300 Sobic010G012900--Sobic007G034500 Sobic003G383500 Sobic003G383500 Sobic010G012900--Sobic003G383500 Sobic010G012900--Sobic006G114300 Sobic010G012900--Sobic009G098100 Sobic001G120000--Sobic004G044000 Sobic004G191200 Sobic004G191200 Sobic001G120000--Sobic004G191200 Sobic001G120000--Sobic002G190800 Sobic001G120000--Sobic006G263800 Sobic002G190100 Sobic002G190100 Sobic001G120000--Sobic002G190100 Sobic004G017200 Sobic004G017200 Sobic001G120000--Sobic004G017200 Sobic002G305700 Sobic002G305700 Sobic001G120000--Sobic002G305700 Sobic001G120000--Sobic001G027600 Sobic001G255400 Sobic001G255400 Sobic001G120000--Sobic001G255400 Sobic001G069500 Sobic001G069500 Sobic001G188600--Sobic001G069500 Sobic001G188600--Sobic006G114300 Sobic001G188600--Sobic001G357200 Sobic001G188600--Sobic009G098100 Sobic001G188600--Sobic010G012900 Sobic004G109000 Sobic004G109000 Sobic001G188600--Sobic004G109000 Sobic007G211100 Sobic007G211100 Sobic001G188600--Sobic007G211100 Sobic001G188600--Sobic004G253800 Sobic008G030000 Sobic008G030000 Sobic001G188600--Sobic008G030000 Sobic007G171800 Sobic007G171800 Sobic007G034500--Sobic007G171800 Sobic007G034500--Sobic004G044000 Sobic006G280050 Sobic006G280050 Sobic007G034500--Sobic006G280050 Sobic007G034500--Sobic004G191200 Sobic007G034500--Sobic001G357200 Sobic007G034500--Sobic009G001500 Sobic007G034500--Sobic001G383900 Sobic001G191000 Sobic001G191000 Sobic007G034500--Sobic001G191000 Sobic007G034500--Sobic001G027600 Sobic005G200600 Sobic005G200600 Sobic004G253800--Sobic005G200600 Sobic003G157500 Sobic003G157500 Sobic004G253800--Sobic003G157500 Sobic005G020200 Sobic005G020200 Sobic004G253800--Sobic005G020200 Sobic004G253800--Sobic001G188600 Sobic006G025700 Sobic006G025700 Sobic004G253800--Sobic006G025700 Sobic009G059100 Sobic009G059100 Sobic004G253800--Sobic009G059100 Sobic004G253800--Sobic009G001500 Sobic004G253800--Sobic001G357200 Sobic004G253800--Sobic006G114300
Octagon: transcription factors


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