Gene annotation
Transcriptome id Sobic.004G070200.2,Sobic.004G070200.1,Sobic.004G070200.3
Synonym emb2746, SbTri06;SbTri06, Sb04g005900
Functional annotation Trihelix Family (PubMedID : 24864043)
SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
metallo-beta-lactamase, putative, expressed
UniProt A0A1Z5RLA4 , C5XWZ4 , C6JSQ9 , C5XX00
Pfam PF07521 PF12706 PF13837 PF07521 PF12706
Panther DB PTHR11203 PTHR11203:SF22
NCBI CDD KOG1137; mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit)
KEGG Orthology -
Gene Ontology GO:0003723; RNA binding


Orthologs (automatic annotation)
TAIR AT5G63420 : RNA-metabolising metallo-beta-lactamase family protein
RAP-DB (Rice) LOC_Os02g33610.1 : metallo-beta-lactamase, putative, expressed
MaizeGDB (Corn) Zm00025a034711 , Zm00025a056645 , Zm00025a019334
Brachypodium KQJ99786
Barley HORVU6Hr1G046420.1 , HORVU6Hr1G046420.2 , HORVU6Hr1G046420.3 , HORVU6Hr1G046420.4 , HORVU6Hr1G046420.6 , HORVU6Hr1G046420.7 , HORVU6Hr1G046420.8 , HORVU6Hr1G046420.9 , HORVU6Hr1G046420.23 , HORVU6Hr1G046420.22 , HORVU6Hr1G046420.21 , HORVU6Hr1G046420.20 , HORVU6Hr1G046420.18 , HORVU6Hr1G046420.19 , HORVU6Hr1G046420.12 , HORVU6Hr1G046420.13 , HORVU6Hr1G046420.10 , HORVU6Hr1G046420.11 , HORVU6Hr1G046420.16 , HORVU6Hr1G046420.17 , HORVU6Hr1G046420.14 , HORVU6Hr1G046420.15 , HORVU0Hr1G015840.1 , HORVU6Hr1G046420.5
Wheat TraesCS6A02G195100 , TraesCS6A02G195100 , TraesCS6A02G195100 , TraesCS6B02G231600 , TraesCS6B02G231600 , TraesCS6B02G231600 , TraesCS6B02G231600 , TraesCS6D02G183700 , TraesCS6D02G183700 , TraesCS6D02G183700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
2 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
3 Sobic.007G131200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.002G172600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional protein folD, putative, expressed -
5 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -
6 Sobic.009G137000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monooxygenase, putative, expressed -
7 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
8 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
9 Sobic.001G246200 MBTB49 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
10 Sobic.004G247800 SET domain-containing protein, putative, expressed -
11 Sobic.010G143400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
12 Sobic.010G248600 - -
13 Sobic.009G085400 acyl-activating enzyme 14, putative, expressed -
14 Sobic.008G148400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA-binding protein DSP1, putative, expressed -
15 Sobic.008G013900 O-methyltransferase, putative, expressed -
16 Sobic.001G164200 cytochrome P450, putative, expressed -
17 Sobic.001G228300 SAP domain containing protein, expressed -
18 Sobic.010G270900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.001G076200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized protein ycf44, putative, expressed K07399: resB, cytochrome c biogenesis protein
20 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit


Gene co-expression network
sample Sobic004G070200 Sobic004G070200 Sobic003G222600 Sobic003G222600 Sobic004G070200--Sobic003G222600 Sobic003G030400 Sobic003G030400 Sobic004G070200--Sobic003G030400 Sobic007G131200 Sobic007G131200 Sobic004G070200--Sobic007G131200 Sobic002G172600 Sobic002G172600 Sobic004G070200--Sobic002G172600 Sobic006G110200 Sobic006G110200 Sobic004G070200--Sobic006G110200 Sobic009G137000 Sobic009G137000 Sobic004G070200--Sobic009G137000 Sobic001G114400 Sobic001G114400 Sobic004G070200--Sobic001G114400 Sobic002G191100 Sobic002G191100 Sobic004G070200--Sobic002G191100 Sobic001G246200 Sobic001G246200 Sobic004G070200--Sobic001G246200 Sobic003G222600--Sobic003G030400 Sobic008G148400 Sobic008G148400 Sobic003G222600--Sobic008G148400 Sobic003G222600--Sobic001G114400 Sobic010G258300 Sobic010G258300 Sobic003G222600--Sobic010G258300 Sobic003G222600--Sobic004G070200 Sobic003G222600--Sobic009G137000 Sobic007G205600 Sobic007G205600 Sobic003G222600--Sobic007G205600 Sobic009G233800 Sobic009G233800 Sobic003G222600--Sobic009G233800 Sobic009G036300 Sobic009G036300 Sobic003G222600--Sobic009G036300 Sobic003G030400--Sobic003G222600 Sobic003G030400--Sobic008G148400 Sobic003G030400--Sobic009G233800 Sobic001G076200 Sobic001G076200 Sobic003G030400--Sobic001G076200 Sobic009G238100 Sobic009G238100 Sobic003G030400--Sobic009G238100 Sobic003G030400--Sobic009G137000 Sobic003G030400--Sobic001G114400 Sobic003G030400--Sobic004G070200 Sobic004G249500 Sobic004G249500 Sobic003G030400--Sobic004G249500 Sobic010G143400 Sobic010G143400 Sobic007G131200--Sobic010G143400 Sobic007G131200--Sobic008G148400 Sobic007G131200--Sobic004G070200 Sobic007G131200--Sobic003G030400 Sobic009G197000 Sobic009G197000 Sobic007G131200--Sobic009G197000 Sobic007G131200--Sobic003G222600 Sobic006G265400 Sobic006G265400 Sobic007G131200--Sobic006G265400 Sobic001G426400 Sobic001G426400 Sobic007G131200--Sobic001G426400 Sobic003G406700 Sobic003G406700 Sobic007G131200--Sobic003G406700 Sobic002G172600--Sobic004G070200 Sobic004G247800 Sobic004G247800 Sobic002G172600--Sobic004G247800 Sobic002G172600--Sobic010G143400 Sobic006G271900 Sobic006G271900 Sobic002G172600--Sobic006G271900 Sobic001G437801 Sobic001G437801 Sobic002G172600--Sobic001G437801 Sobic004G216700 Sobic004G216700 Sobic002G172600--Sobic004G216700 Sobic002G172600--Sobic007G131200 Sobic001G254400 Sobic001G254400 Sobic002G172600--Sobic001G254400 Sobic001G040600 Sobic001G040600 Sobic002G172600--Sobic001G040600 Sobic003G039300 Sobic003G039300 Sobic006G110200--Sobic003G039300 Sobic007G069400 Sobic007G069400 Sobic006G110200--Sobic007G069400 Sobic002G140000 Sobic002G140000 Sobic006G110200--Sobic002G140000 Sobic001G537700 Sobic001G537700 Sobic006G110200--Sobic001G537700 Sobic006G110200--Sobic009G137000 Sobic007G015300 Sobic007G015300 Sobic006G110200--Sobic007G015300 Sobic002G045700 Sobic002G045700 Sobic006G110200--Sobic002G045700 Sobic010G027200 Sobic010G027200 Sobic006G110200--Sobic010G027200 Sobic001G228300 Sobic001G228300 Sobic006G110200--Sobic001G228300 Sobic001G395300 Sobic001G395300 Sobic009G137000--Sobic001G395300 Sobic002G404900 Sobic002G404900 Sobic009G137000--Sobic002G404900 Sobic009G137000--Sobic003G039300 Sobic002G243650 Sobic002G243650 Sobic009G137000--Sobic002G243650 Sobic009G137000--Sobic009G233800 Sobic009G137000--Sobic003G222600 Sobic009G137000--Sobic006G110200 Sobic006G237100 Sobic006G237100 Sobic009G137000--Sobic006G237100 Sobic009G137000--Sobic003G030400 Sobic001G114400--Sobic003G222600 Sobic001G114400--Sobic002G191100 Sobic001G114400--Sobic003G030400 Sobic001G114400--Sobic009G036300 Sobic001G114400--Sobic004G070200 Sobic001G114400--Sobic008G148400 Sobic010G039200 Sobic010G039200 Sobic001G114400--Sobic010G039200 Sobic003G324100 Sobic003G324100 Sobic001G114400--Sobic003G324100 Sobic010G211500 Sobic010G211500 Sobic001G114400--Sobic010G211500 Sobic002G191100--Sobic001G114400 Sobic002G181132 Sobic002G181132 Sobic002G191100--Sobic002G181132 Sobic003G162800 Sobic003G162800 Sobic002G191100--Sobic003G162800 Sobic008G038600 Sobic008G038600 Sobic002G191100--Sobic008G038600 Sobic002G191100--Sobic003G039300 Sobic003G345900 Sobic003G345900 Sobic002G191100--Sobic003G345900 Sobic007G137800 Sobic007G137800 Sobic002G191100--Sobic007G137800 Sobic009G214200 Sobic009G214200 Sobic002G191100--Sobic009G214200 Sobic002G191100--Sobic004G070200 Sobic005G173366 Sobic005G173366 Sobic001G246200--Sobic005G173366 Sobic007G129401 Sobic007G129401 Sobic001G246200--Sobic007G129401 Sobic005G043400 Sobic005G043400 Sobic001G246200--Sobic005G043400 Sobic001G246200--Sobic010G143400 Sobic002G128400 Sobic002G128400 Sobic001G246200--Sobic002G128400 Sobic008G013900 Sobic008G013900 Sobic001G246200--Sobic008G013900 Sobic005G059200 Sobic005G059200 Sobic001G246200--Sobic005G059200 Sobic009G162401 Sobic009G162401 Sobic001G246200--Sobic009G162401 Sobic001G246200--Sobic004G070200
Octagon: transcription factors


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