Gene annotation
Transcriptome id Sobic.002G172600.1,Sobic.002G172600.2
Synonym Sb02g022160
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
bifunctional protein folD, putative, expressed
UniProt C5X9V9 , A0A1W0W4R0
Pfam PF02882 PF00763 PF00763 PF02882
Panther DB PTHR10025 PTHR10025:SF43 PTHR10025:SF43 PTHR10025
NCBI CDD KOG0089; Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase
KEGG Orthology -
Gene Ontology GO:0009396; folic acid-containing compound biosynthetic process GO:0004488methylenetetrahydrofolate dehydrogenase (NADP+) activity GO:0003824catalytic activity GO:0003824catalytic activity GO:0004488methylenetetrahydrofolate dehydrogenase (NADP+) activity GO:0009396folic acid-containing compound biosynthetic process


Orthologs (automatic annotation)
TAIR AT2G38660 : Amino acid dehydrogenase family protein
RAP-DB (Rice) LOC_Os09g15810.1 : bifunctional protein folD, putative, expressed
MaizeGDB (Corn) Zm00025a013756
Brachypodium KQJ89852
Barley HORVU5Hr1G056400.2 , HORVU5Hr1G056400.1
Wheat TraesCS5A02G184400 , TraesCS5D02G189400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G070200 Trihelix Family(PubMedID : 24864043)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@metallo-beta-lactamase, putative, expressed -
2 Sobic.004G247800 SET domain-containing protein, putative, expressed -
3 Sobic.010G143400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3
5 Sobic.001G437801 - K04077: groEL, chaperonin GroEL
6 Sobic.004G216700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 21930910)@-(PubMedID : 24884377)@response regulator receiver domain containing protein, expressed K12127: TOC1, pseudo-response regulator 1
7 Sobic.007G131200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G254400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized oxidoreductase, putative, expressed -
9 Sobic.001G040600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNA topoisomerase 2, putative, expressed K02469: DNA gyrase subunit A
10 Sobic.001G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoribosylformylglycinamidine synthase, putative, expressed K01952: PFAS, phosphoribosylformylglycinamidine synthase
11 Sobic.003G222600 similar to DEAD-box ATP-dependent RNA helicase 25(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
12 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
13 Sobic.007G060900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@disease resistance protein RPM1, putative, expressed -
14 Sobic.008G056900 RFC4 - Putative clamp loader of PCNA, replication factor C subunit 4, expressed K10755: replication factor C subunit 2/4
15 Sobic.003G030400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA binding protein, putative, expressed K11145: ribonuclease III family protein
16 Sobic.001G246200 MBTB49 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
17 Sobic.003G183900 pentatricopeptide, putative, expressed -
18 Sobic.001G228300 SAP domain containing protein, expressed -
19 Sobic.006G265400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@heat shock protein DnaJ, putative, expressed -
20 Sobic.006G110200 CRS1/YhbY domain containing protein, expressed -


Gene co-expression network
sample Sobic002G172600 Sobic002G172600 Sobic004G070200 Sobic004G070200 Sobic002G172600--Sobic004G070200 Sobic004G247800 Sobic004G247800 Sobic002G172600--Sobic004G247800 Sobic010G143400 Sobic010G143400 Sobic002G172600--Sobic010G143400 Sobic006G271900 Sobic006G271900 Sobic002G172600--Sobic006G271900 Sobic001G437801 Sobic001G437801 Sobic002G172600--Sobic001G437801 Sobic004G216700 Sobic004G216700 Sobic002G172600--Sobic004G216700 Sobic007G131200 Sobic007G131200 Sobic002G172600--Sobic007G131200 Sobic001G254400 Sobic001G254400 Sobic002G172600--Sobic001G254400 Sobic001G040600 Sobic001G040600 Sobic002G172600--Sobic001G040600 Sobic003G222600 Sobic003G222600 Sobic004G070200--Sobic003G222600 Sobic003G030400 Sobic003G030400 Sobic004G070200--Sobic003G030400 Sobic004G070200--Sobic007G131200 Sobic004G070200--Sobic002G172600 Sobic006G110200 Sobic006G110200 Sobic004G070200--Sobic006G110200 Sobic009G137000 Sobic009G137000 Sobic004G070200--Sobic009G137000 Sobic001G114400 Sobic001G114400 Sobic004G070200--Sobic001G114400 Sobic002G191100 Sobic002G191100 Sobic004G070200--Sobic002G191100 Sobic001G246200 Sobic001G246200 Sobic004G070200--Sobic001G246200 Sobic004G247800--Sobic002G172600 Sobic004G247800--Sobic004G070200 Sobic007G116100 Sobic007G116100 Sobic004G247800--Sobic007G116100 Sobic006G263800 Sobic006G263800 Sobic004G247800--Sobic006G263800 Sobic001G542800 Sobic001G542800 Sobic004G247800--Sobic001G542800 Sobic001G228300 Sobic001G228300 Sobic004G247800--Sobic001G228300 Sobic008G021700 Sobic008G021700 Sobic004G247800--Sobic008G021700 Sobic006G095800 Sobic006G095800 Sobic004G247800--Sobic006G095800 Sobic004G247800--Sobic002G191100 Sobic010G143400--Sobic007G131200 Sobic009G197000 Sobic009G197000 Sobic010G143400--Sobic009G197000 Sobic002G128400 Sobic002G128400 Sobic010G143400--Sobic002G128400 Sobic008G013900 Sobic008G013900 Sobic010G143400--Sobic008G013900 Sobic009G162401 Sobic009G162401 Sobic010G143400--Sobic009G162401 Sobic010G270900 Sobic010G270900 Sobic010G143400--Sobic010G270900 Sobic010G143400--Sobic001G246200 Sobic004G315100 Sobic004G315100 Sobic010G143400--Sobic004G315100 Sobic006G099501 Sobic006G099501 Sobic010G143400--Sobic006G099501 Sobic006G271900--Sobic001G040600 Sobic007G060600 Sobic007G060600 Sobic006G271900--Sobic007G060600 Sobic009G253200 Sobic009G253200 Sobic006G271900--Sobic009G253200 Sobic001G049800 Sobic001G049800 Sobic006G271900--Sobic001G049800 Sobic006G111200 Sobic006G111200 Sobic006G271900--Sobic006G111200 Sobic002G251800 Sobic002G251800 Sobic006G271900--Sobic002G251800 Sobic001G480400 Sobic001G480400 Sobic006G271900--Sobic001G480400 Sobic005G028300 Sobic005G028300 Sobic006G271900--Sobic005G028300 Sobic001G081300 Sobic001G081300 Sobic006G271900--Sobic001G081300 Sobic010G099300 Sobic010G099300 Sobic001G437801--Sobic010G099300 Sobic001G437801--Sobic001G040600 Sobic001G395300 Sobic001G395300 Sobic001G437801--Sobic001G395300 Sobic001G138000 Sobic001G138000 Sobic001G437801--Sobic001G138000 Sobic007G182600 Sobic007G182600 Sobic001G437801--Sobic007G182600 Sobic001G437801--Sobic003G030400 Sobic001G368300 Sobic001G368300 Sobic001G437801--Sobic001G368300 Sobic001G437801--Sobic001G228300 Sobic001G437801--Sobic001G049800 Sobic002G376400 Sobic002G376400 Sobic004G216700--Sobic002G376400 Sobic005G085100 Sobic005G085100 Sobic004G216700--Sobic005G085100 Sobic001G341300 Sobic001G341300 Sobic004G216700--Sobic001G341300 Sobic004G216700--Sobic001G480400 Sobic004G216700--Sobic010G143400 Sobic009G159700 Sobic009G159700 Sobic004G216700--Sobic009G159700 Sobic006G241200 Sobic006G241200 Sobic004G216700--Sobic006G241200 Sobic004G216700--Sobic008G013900 Sobic007G189800 Sobic007G189800 Sobic004G216700--Sobic007G189800 Sobic007G131200--Sobic010G143400 Sobic008G148400 Sobic008G148400 Sobic007G131200--Sobic008G148400 Sobic007G131200--Sobic004G070200 Sobic007G131200--Sobic003G030400 Sobic007G131200--Sobic009G197000 Sobic007G131200--Sobic003G222600 Sobic006G265400 Sobic006G265400 Sobic007G131200--Sobic006G265400 Sobic001G426400 Sobic001G426400 Sobic007G131200--Sobic001G426400 Sobic003G406700 Sobic003G406700 Sobic007G131200--Sobic003G406700 Sobic007G060900 Sobic007G060900 Sobic001G254400--Sobic007G060900 Sobic001G254400--Sobic002G172600 Sobic003G128000 Sobic003G128000 Sobic001G254400--Sobic003G128000 Sobic008G185900 Sobic008G185900 Sobic001G254400--Sobic008G185900 Sobic001G254400--Sobic004G247800 Sobic002G407800 Sobic002G407800 Sobic001G254400--Sobic002G407800 Sobic003G176200 Sobic003G176200 Sobic001G254400--Sobic003G176200 Sobic001G254400--Sobic004G216700 Sobic001G141300 Sobic001G141300 Sobic001G254400--Sobic001G141300 Sobic001G040600--Sobic007G060600 Sobic001G040600--Sobic006G271900 Sobic001G040600--Sobic010G099300 Sobic003G336500 Sobic003G336500 Sobic001G040600--Sobic003G336500 Sobic001G040600--Sobic001G049800 Sobic003G051500 Sobic003G051500 Sobic001G040600--Sobic003G051500 Sobic008G100400 Sobic008G100400 Sobic001G040600--Sobic008G100400 Sobic001G040600--Sobic001G081300 Sobic001G040600--Sobic002G251800
Octagon: transcription factors


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