Gene annotation
Transcriptome id Sobic.003G183900.1
Synonym Sb03g024530
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6Q446
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G64310 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g36540.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a028815
Brachypodium KQK08238
Barley HORVU3Hr1G084510.2 , HORVU3Hr1G084510.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
2 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
3 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
4 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
5 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
6 Sobic.010G123700 expressed protein -
7 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
8 Sobic.002G172600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional protein folD, putative, expressed -
9 Sobic.003G128000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
10 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
11 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
12 Sobic.001G230200 inosine triphosphate pyrophosphatase, putative, expressed K01519: inosine triphosphate pyrophosphatase
13 Sobic.008G171800 WD domain, G-beta repeat domain containing protein, expressed K14830: MAK11, protein MAK11
14 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
15 Sobic.005G178700 OsFBX135 - F-box domain containing protein, expressed -
16 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
17 Sobic.007G185600 methyltransferase domain containing protein, expressed K15190: MEPCE, 7SK snRNA methylphosphate capping enzyme
18 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
19 Sobic.010G073200 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein
20 Sobic.008G098600 DNA-directed RNA polymerase III subunit RPC9, putative, expressed -


Gene co-expression network
sample Sobic003G183900 Sobic003G183900 Sobic001G001200 Sobic001G001200 Sobic003G183900--Sobic001G001200 Sobic001G322600 Sobic001G322600 Sobic003G183900--Sobic001G322600 Sobic010G083900 Sobic010G083900 Sobic003G183900--Sobic010G083900 Sobic001G401400 Sobic001G401400 Sobic003G183900--Sobic001G401400 Sobic003G322200 Sobic003G322200 Sobic003G183900--Sobic003G322200 Sobic010G123700 Sobic010G123700 Sobic003G183900--Sobic010G123700 Sobic003G407600 Sobic003G407600 Sobic003G183900--Sobic003G407600 Sobic002G172600 Sobic002G172600 Sobic003G183900--Sobic002G172600 Sobic003G128000 Sobic003G128000 Sobic003G183900--Sobic003G128000 Sobic003G051500 Sobic003G051500 Sobic001G001200--Sobic003G051500 Sobic005G028300 Sobic005G028300 Sobic001G001200--Sobic005G028300 Sobic003G419800 Sobic003G419800 Sobic001G001200--Sobic003G419800 Sobic001G391101 Sobic001G391101 Sobic001G001200--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic001G001200--Sobic001G390900 Sobic001G001200--Sobic003G183900 Sobic001G081300 Sobic001G081300 Sobic001G001200--Sobic001G081300 Sobic007G179600 Sobic007G179600 Sobic001G001200--Sobic007G179600 Sobic001G001200--Sobic010G083900 Sobic001G322600--Sobic010G083900 Sobic009G163600 Sobic009G163600 Sobic001G322600--Sobic009G163600 Sobic002G344500 Sobic002G344500 Sobic001G322600--Sobic002G344500 Sobic003G014700 Sobic003G014700 Sobic001G322600--Sobic003G014700 Sobic004G354000 Sobic004G354000 Sobic001G322600--Sobic004G354000 Sobic010G224700 Sobic010G224700 Sobic001G322600--Sobic010G224700 Sobic001G322600--Sobic003G407600 Sobic001G322600--Sobic005G028300 Sobic002G378100 Sobic002G378100 Sobic001G322600--Sobic002G378100 Sobic010G083900--Sobic002G378100 Sobic010G083900--Sobic001G322600 Sobic001G049800 Sobic001G049800 Sobic010G083900--Sobic001G049800 Sobic001G422500 Sobic001G422500 Sobic010G083900--Sobic001G422500 Sobic010G083900--Sobic010G224700 Sobic004G151000 Sobic004G151000 Sobic010G083900--Sobic004G151000 Sobic010G083900--Sobic003G014700 Sobic010G083900--Sobic005G028300 Sobic001G119600 Sobic001G119600 Sobic010G083900--Sobic001G119600 Sobic004G036700 Sobic004G036700 Sobic001G401400--Sobic004G036700 Sobic006G198600 Sobic006G198600 Sobic001G401400--Sobic006G198600 Sobic005G028100 Sobic005G028100 Sobic001G401400--Sobic005G028100 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic006G225400 Sobic006G225400 Sobic001G401400--Sobic006G225400 Sobic001G401400--Sobic001G422500 Sobic001G401400--Sobic003G407600 Sobic003G322200--Sobic001G372800 Sobic003G322200--Sobic001G401400 Sobic003G123200 Sobic003G123200 Sobic003G322200--Sobic003G123200 Sobic003G412000 Sobic003G412000 Sobic003G322200--Sobic003G412000 Sobic010G038800 Sobic010G038800 Sobic003G322200--Sobic010G038800 Sobic003G322200--Sobic006G198600 Sobic003G336500 Sobic003G336500 Sobic003G322200--Sobic003G336500 Sobic003G322200--Sobic002G344500 Sobic001G483800 Sobic001G483800 Sobic003G322200--Sobic001G483800 Sobic008G163400 Sobic008G163400 Sobic010G123700--Sobic008G163400 Sobic001G122200 Sobic001G122200 Sobic010G123700--Sobic001G122200 Sobic007G087900 Sobic007G087900 Sobic010G123700--Sobic007G087900 Sobic004G241000 Sobic004G241000 Sobic010G123700--Sobic004G241000 Sobic006G262800 Sobic006G262800 Sobic010G123700--Sobic006G262800 Sobic003G239000 Sobic003G239000 Sobic010G123700--Sobic003G239000 Sobic010G123700--Sobic001G001200 Sobic009G155400 Sobic009G155400 Sobic010G123700--Sobic009G155400 Sobic008G039000 Sobic008G039000 Sobic010G123700--Sobic008G039000 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic010G247400 Sobic010G247400 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic008G009600 Sobic008G009600 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic003G407600--Sobic001G322600 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic004G070200 Sobic004G070200 Sobic002G172600--Sobic004G070200 Sobic004G247800 Sobic004G247800 Sobic002G172600--Sobic004G247800 Sobic010G143400 Sobic010G143400 Sobic002G172600--Sobic010G143400 Sobic006G271900 Sobic006G271900 Sobic002G172600--Sobic006G271900 Sobic001G437801 Sobic001G437801 Sobic002G172600--Sobic001G437801 Sobic004G216700 Sobic004G216700 Sobic002G172600--Sobic004G216700 Sobic007G131200 Sobic007G131200 Sobic002G172600--Sobic007G131200 Sobic001G254400 Sobic001G254400 Sobic002G172600--Sobic001G254400 Sobic001G040600 Sobic001G040600 Sobic002G172600--Sobic001G040600 Sobic001G392100 Sobic001G392100 Sobic003G128000--Sobic001G392100 Sobic003G128000--Sobic009G155400 Sobic001G009400 Sobic001G009400 Sobic003G128000--Sobic001G009400 Sobic003G128000--Sobic008G163400 Sobic004G217900 Sobic004G217900 Sobic003G128000--Sobic004G217900 Sobic001G149100 Sobic001G149100 Sobic003G128000--Sobic001G149100 Sobic003G128000--Sobic003G239000 Sobic001G347100 Sobic001G347100 Sobic003G128000--Sobic001G347100 Sobic003G128000--Sobic001G254400
Octagon: transcription factors


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