Gene annotation
Transcriptome id Sobic.008G171800.1
Synonym Sb08g021660
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5YS24
Pfam PF00400
Panther DB PTHR22844
NCBI CDD KOG0294; WD40 repeat-containing protein
KEGG Orthology K14830; MAK11, protein MAK11
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G65030 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os12g42150.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a048887
Brachypodium KQJ85774
Barley HORVU0Hr1G027960.1 , HORVU5Hr1G008820.1 , HORVU5Hr1G008820.2
Wheat TraesCS5A02G033600 , TraesCS5B02G033700
Populus -


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cDNA sequences
Sobic.008G171800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G206500 queuine tRNA-ribosyltransferase, putative, expressed K00773: tgt, queuine tRNA-ribosyltransferase
2 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
3 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
4 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
5 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
6 Sobic.008G185900 RNA recognition motif containing protein, expressed -
7 Sobic.001G141300 RNA recognition motif containing protein, expressed -
8 Sobic.004G130200 ribosome biogenesis protein NEP1, putative, expressed K14568: EMG1, rRNA small subunit pseudouridine methyltransferase Nep1
9 Sobic.003G401400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RNA recognition motif containing protein, putative, expressed -
10 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
11 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
12 Sobic.007G168200 peptidyl-prolyl cis-trans isomerase, putative, expressed K12733: peptidyl-prolyl cis-trans isomerase-like 1
13 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
14 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
15 Sobic.002G146400 - -
16 Sobic.003G183900 pentatricopeptide, putative, expressed -
17 Sobic.001G380500 appr-1-p processing enzyme family protein, putative, expressed -
18 Sobic.008G133500 diaminopimelate epimerase, chloroplast precursor, putative, expressed K01778: diaminopimelate epimerase
19 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
20 Sobic.001G157300 expressed protein K14793: ribosomal RNA-processing protein 9


Gene co-expression network
sample Sobic008G171800 Sobic008G171800 Sobic002G206500 Sobic002G206500 Sobic008G171800--Sobic002G206500 Sobic003G407600 Sobic003G407600 Sobic008G171800--Sobic003G407600 Sobic002G262100 Sobic002G262100 Sobic008G171800--Sobic002G262100 Sobic004G173100 Sobic004G173100 Sobic008G171800--Sobic004G173100 Sobic006G198600 Sobic006G198600 Sobic008G171800--Sobic006G198600 Sobic008G185900 Sobic008G185900 Sobic008G171800--Sobic008G185900 Sobic001G141300 Sobic001G141300 Sobic008G171800--Sobic001G141300 Sobic004G130200 Sobic004G130200 Sobic008G171800--Sobic004G130200 Sobic003G401400 Sobic003G401400 Sobic008G171800--Sobic003G401400 Sobic002G206500--Sobic008G171800 Sobic001G157300 Sobic001G157300 Sobic002G206500--Sobic001G157300 Sobic002G206500--Sobic006G198600 Sobic001G367500 Sobic001G367500 Sobic002G206500--Sobic001G367500 Sobic002G206500--Sobic002G262100 Sobic009G032100 Sobic009G032100 Sobic002G206500--Sobic009G032100 Sobic002G092050 Sobic002G092050 Sobic002G206500--Sobic002G092050 Sobic006G126300 Sobic006G126300 Sobic002G206500--Sobic006G126300 Sobic002G238000 Sobic002G238000 Sobic002G206500--Sobic002G238000 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic010G247400 Sobic010G247400 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic008G009600 Sobic008G009600 Sobic003G407600--Sobic008G009600 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic001G401400 Sobic001G401400 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic001G119600 Sobic001G119600 Sobic002G262100--Sobic001G119600 Sobic002G399200 Sobic002G399200 Sobic002G262100--Sobic002G399200 Sobic002G378100 Sobic002G378100 Sobic002G262100--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic002G262100--Sobic008G163500 Sobic001G422500 Sobic001G422500 Sobic002G262100--Sobic001G422500 Sobic002G262100--Sobic001G157300 Sobic002G262100--Sobic004G173100 Sobic003G425100 Sobic003G425100 Sobic002G262100--Sobic003G425100 Sobic002G262100--Sobic006G198600 Sobic009G071700 Sobic009G071700 Sobic004G173100--Sobic009G071700 Sobic006G251600 Sobic006G251600 Sobic004G173100--Sobic006G251600 Sobic004G173100--Sobic003G425100 Sobic004G173100--Sobic002G262100 Sobic004G173100--Sobic006G198600 Sobic004G173100--Sobic002G399200 Sobic004G173100--Sobic003G407600 Sobic005G100900 Sobic005G100900 Sobic004G173100--Sobic005G100900 Sobic004G173100--Sobic008G163500 Sobic003G123200 Sobic003G123200 Sobic006G198600--Sobic003G123200 Sobic006G198600--Sobic009G071700 Sobic006G198600--Sobic001G401400 Sobic006G198600--Sobic008G163500 Sobic006G198600--Sobic006G251600 Sobic008G049100 Sobic008G049100 Sobic006G198600--Sobic008G049100 Sobic006G198600--Sobic003G425100 Sobic004G036700 Sobic004G036700 Sobic006G198600--Sobic004G036700 Sobic006G198600--Sobic001G157300 Sobic008G185900--Sobic001G141300 Sobic008G185900--Sobic003G401400 Sobic001G341300 Sobic001G341300 Sobic008G185900--Sobic001G341300 Sobic002G376400 Sobic002G376400 Sobic008G185900--Sobic002G376400 Sobic008G133500 Sobic008G133500 Sobic008G185900--Sobic008G133500 Sobic002G279100 Sobic002G279100 Sobic008G185900--Sobic002G279100 Sobic004G216700 Sobic004G216700 Sobic008G185900--Sobic004G216700 Sobic008G185900--Sobic008G171800 Sobic006G241200 Sobic006G241200 Sobic008G185900--Sobic006G241200 Sobic001G141300--Sobic008G185900 Sobic001G141300--Sobic003G401400 Sobic009G197000 Sobic009G197000 Sobic001G141300--Sobic009G197000 Sobic001G426400 Sobic001G426400 Sobic001G141300--Sobic001G426400 Sobic001G191200 Sobic001G191200 Sobic001G141300--Sobic001G191200 Sobic006G265400 Sobic006G265400 Sobic001G141300--Sobic006G265400 Sobic006G279800 Sobic006G279800 Sobic001G141300--Sobic006G279800 Sobic001G423100 Sobic001G423100 Sobic001G141300--Sobic001G423100 Sobic001G078200 Sobic001G078200 Sobic001G141300--Sobic001G078200 Sobic002G406600 Sobic002G406600 Sobic004G130200--Sobic002G406600 Sobic003G424800 Sobic003G424800 Sobic004G130200--Sobic003G424800 Sobic001G404100 Sobic001G404100 Sobic004G130200--Sobic001G404100 Sobic004G069500 Sobic004G069500 Sobic004G130200--Sobic004G069500 Sobic004G248900 Sobic004G248900 Sobic004G130200--Sobic004G248900 Sobic001G117400 Sobic001G117400 Sobic004G130200--Sobic001G117400 Sobic002G341800 Sobic002G341800 Sobic004G130200--Sobic002G341800 Sobic009G190300 Sobic009G190300 Sobic004G130200--Sobic009G190300 Sobic001G147100 Sobic001G147100 Sobic004G130200--Sobic001G147100 Sobic003G401400--Sobic001G141300 Sobic003G401400--Sobic008G185900 Sobic003G401400--Sobic002G376400 Sobic001G081400 Sobic001G081400 Sobic003G401400--Sobic001G081400 Sobic004G309500 Sobic004G309500 Sobic003G401400--Sobic004G309500 Sobic007G034400 Sobic007G034400 Sobic003G401400--Sobic007G034400 Sobic003G401400--Sobic008G171800 Sobic001G202400 Sobic001G202400 Sobic003G401400--Sobic001G202400 Sobic004G028400 Sobic004G028400 Sobic003G401400--Sobic004G028400
Octagon: transcription factors


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