Gene annotation
Transcriptome id Sobic.004G130200.1
Synonym Sb04g011280
Functional annotation ribosome biogenesis protein NEP1, putative, expressed
UniProt C5Y0G8
Pfam PF03587
Panther DB PTHR12636 PTHR12636:SF5
NCBI CDD KOG3073; Protein required for 18S rRNA maturation and 40S ribosome biogenesis
KEGG Orthology K14568; EMG1, rRNA small subunit pseudouridine methyltransferase Nep1
Gene Ontology GO:0008168; methyltransferase activity


Orthologs (automatic annotation)
TAIR AT3G57000 : nucleolar essential protein-related
RAP-DB (Rice) LOC_Os02g18830.1 : ribosome biogenesis protein NEP1, putative, expressed
MaizeGDB (Corn) Zm00025a020891
Brachypodium KQJ94453
Barley HORVU6Hr1G053970.1 , HORVU7Hr1G105060.1 , HORVU7Hr1G105060.2
Wheat TraesCS6A02G211200 , TraesCS6A02G211200 , TraesCS7A02G455600 , TraesCS1A02G010700 , TraesCS7B02G356300 , TraesCS7B02G356100 , TraesCS6B02G240700 , TraesCS6D02G194300 , TraesCS6D02G194300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G406600 RNA recognition motif containing protein, putative, expressed K14785: ESF2, ESF2/ABP1 family protein
2 Sobic.003G424800 MKI67 FHA domain-interacting nucleolar phosphoprotein(PubMedID : 24906815)@RNA recognition motif containing protein, putative, expressed K14838: nucleolar protein 15
3 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
4 Sobic.004G069500 expressed protein -
5 Sobic.004G248900 50S ribosomal protein L17, putative, expressed K02879: RP-L17, MRPL17, large subunit ribosomal protein L17
6 Sobic.001G117400 DNA-directed RNA polymerase I subunit RPA12, putative, expressed K03000: RPA12, DNA-directed RNA polymerase I subunit RPA12
7 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
8 Sobic.009G190300 Brix domain containing protein, putative, expressed K14847: ribosome production factor 2
9 Sobic.001G147100 pre-rRNA-processing protein TSR2, putative, expressed K14800: pre-rRNA-processing protein TSR2
10 Sobic.003G338100 methionyl-tRNA synthetase, putative, expressed K15437: AIMP1, aminoacyl tRNA synthase complex-interacting multifunctional protein 1
11 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
12 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
13 Sobic.009G130400 DNA-directed RNA polymerase II subunit RPB7, putative, expressed K03015: RPB7, DNA-directed RNA polymerase II subunit RPB7
14 Sobic.009G104000 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
15 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
16 Sobic.004G216400 RAN GTPase-activating protein 1, putative, expressed K14319: Ran GTPase-activating protein 1
17 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
18 Sobic.008G171800 WD domain, G-beta repeat domain containing protein, expressed K14830: MAK11, protein MAK11
19 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein
20 Sobic.005G003800 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4


Gene co-expression network
sample Sobic004G130200 Sobic004G130200 Sobic002G406600 Sobic002G406600 Sobic004G130200--Sobic002G406600 Sobic003G424800 Sobic003G424800 Sobic004G130200--Sobic003G424800 Sobic001G404100 Sobic001G404100 Sobic004G130200--Sobic001G404100 Sobic004G069500 Sobic004G069500 Sobic004G130200--Sobic004G069500 Sobic004G248900 Sobic004G248900 Sobic004G130200--Sobic004G248900 Sobic001G117400 Sobic001G117400 Sobic004G130200--Sobic001G117400 Sobic002G341800 Sobic002G341800 Sobic004G130200--Sobic002G341800 Sobic009G190300 Sobic009G190300 Sobic004G130200--Sobic009G190300 Sobic001G147100 Sobic001G147100 Sobic004G130200--Sobic001G147100 Sobic009G138700 Sobic009G138700 Sobic002G406600--Sobic009G138700 Sobic002G406600--Sobic004G130200 Sobic002G406600--Sobic001G147100 Sobic002G086200 Sobic002G086200 Sobic002G406600--Sobic002G086200 Sobic002G406600--Sobic003G424800 Sobic010G247400 Sobic010G247400 Sobic002G406600--Sobic010G247400 Sobic003G397700 Sobic003G397700 Sobic002G406600--Sobic003G397700 Sobic010G051500 Sobic010G051500 Sobic002G406600--Sobic010G051500 Sobic007G039400 Sobic007G039400 Sobic002G406600--Sobic007G039400 Sobic003G424800--Sobic001G117400 Sobic002G116200 Sobic002G116200 Sobic003G424800--Sobic002G116200 Sobic002G413400 Sobic002G413400 Sobic003G424800--Sobic002G413400 Sobic003G424800--Sobic001G147100 Sobic003G362400 Sobic003G362400 Sobic003G424800--Sobic003G362400 Sobic001G529000 Sobic001G529000 Sobic003G424800--Sobic001G529000 Sobic010G008100 Sobic010G008100 Sobic003G424800--Sobic010G008100 Sobic009G008600 Sobic009G008600 Sobic003G424800--Sobic009G008600 Sobic001G331900 Sobic001G331900 Sobic003G424800--Sobic001G331900 Sobic001G404100--Sobic002G341800 Sobic001G481700 Sobic001G481700 Sobic001G404100--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic001G404100--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic001G404100--Sobic008G137600 Sobic009G104000 Sobic009G104000 Sobic001G404100--Sobic009G104000 Sobic001G096100 Sobic001G096100 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic009G212300 Sobic009G212300 Sobic001G404100--Sobic009G212300 Sobic006G252200 Sobic006G252200 Sobic001G404100--Sobic006G252200 Sobic004G069500--Sobic003G424800 Sobic004G069500--Sobic004G130200 Sobic002G392800 Sobic002G392800 Sobic004G069500--Sobic002G392800 Sobic004G310900 Sobic004G310900 Sobic004G069500--Sobic004G310900 Sobic004G352200 Sobic004G352200 Sobic004G069500--Sobic004G352200 Sobic003G160900 Sobic003G160900 Sobic004G069500--Sobic003G160900 Sobic003G130600 Sobic003G130600 Sobic004G069500--Sobic003G130600 Sobic004G069500--Sobic001G117400 Sobic009G211700 Sobic009G211700 Sobic004G069500--Sobic009G211700 Sobic005G105500 Sobic005G105500 Sobic004G248900--Sobic005G105500 Sobic005G191600 Sobic005G191600 Sobic004G248900--Sobic005G191600 Sobic001G129400 Sobic001G129400 Sobic004G248900--Sobic001G129400 Sobic007G143000 Sobic007G143000 Sobic004G248900--Sobic007G143000 Sobic001G060300 Sobic001G060300 Sobic004G248900--Sobic001G060300 Sobic010G013900 Sobic010G013900 Sobic004G248900--Sobic010G013900 Sobic004G248900--Sobic001G117400 Sobic003G326900 Sobic003G326900 Sobic004G248900--Sobic003G326900 Sobic004G248900--Sobic001G404100 Sobic001G117400--Sobic003G160900 Sobic001G117400--Sobic003G424800 Sobic002G371100 Sobic002G371100 Sobic001G117400--Sobic002G371100 Sobic001G117400--Sobic005G191600 Sobic002G255100 Sobic002G255100 Sobic001G117400--Sobic002G255100 Sobic004G002350 Sobic004G002350 Sobic001G117400--Sobic004G002350 Sobic001G018800 Sobic001G018800 Sobic001G117400--Sobic001G018800 Sobic001G117400--Sobic001G404100 Sobic001G117400--Sobic001G481700 Sobic001G458700 Sobic001G458700 Sobic002G341800--Sobic001G458700 Sobic002G341800--Sobic001G404100 Sobic002G341800--Sobic001G481700 Sobic007G176200 Sobic007G176200 Sobic002G341800--Sobic007G176200 Sobic006G044600 Sobic006G044600 Sobic002G341800--Sobic006G044600 Sobic002G394600 Sobic002G394600 Sobic002G341800--Sobic002G394600 Sobic002G341800--Sobic005G105500 Sobic002G341800--Sobic008G137600 Sobic004G081800 Sobic004G081800 Sobic002G341800--Sobic004G081800 Sobic005G003800 Sobic005G003800 Sobic009G190300--Sobic005G003800 Sobic008G004000 Sobic008G004000 Sobic009G190300--Sobic008G004000 Sobic009G190300--Sobic001G481700 Sobic009G190300--Sobic002G341800 Sobic003G338100 Sobic003G338100 Sobic009G190300--Sobic003G338100 Sobic009G190300--Sobic002G394600 Sobic001G091900 Sobic001G091900 Sobic009G190300--Sobic001G091900 Sobic009G190300--Sobic001G404100 Sobic004G216400 Sobic004G216400 Sobic009G190300--Sobic004G216400 Sobic001G147100--Sobic003G424800 Sobic001G147100--Sobic001G404100 Sobic006G011000 Sobic006G011000 Sobic001G147100--Sobic006G011000 Sobic009G187300 Sobic009G187300 Sobic001G147100--Sobic009G187300 Sobic001G147100--Sobic002G406600 Sobic004G060600 Sobic004G060600 Sobic001G147100--Sobic004G060600 Sobic001G408100 Sobic001G408100 Sobic001G147100--Sobic001G408100 Sobic001G147100--Sobic009G104000 Sobic002G266800 Sobic002G266800 Sobic001G147100--Sobic002G266800
Octagon: transcription factors


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