Gene annotation
Transcriptome id Sobic.001G147100.1
Synonym Sb01g012820
Functional annotation pre-rRNA-processing protein TSR2, putative, expressed
UniProt C5WQF4
Pfam PF10273
Panther DB PTHR21250:SF0 PTHR21250
NCBI CDD KOG4032; Uncharacterized conserved protein
KEGG Orthology K14800; pre-rRNA-processing protein TSR2
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G27990 : Pre-rRNA-processing protein TSR2, conserved region
RAP-DB (Rice) LOC_Os08g39820.1 : pre-rRNA-processing protein TSR2, putative, expressed
MaizeGDB (Corn) Zm00025a017195
Brachypodium KQJ86517 , KQK13890 , PNT75631 , KQK17649 , KQK17648
Barley HORVU4Hr1G002500.9 , HORVU4Hr1G002500.4 , HORVU4Hr1G002500.7 , HORVU4Hr1G002500.6 , HORVU4Hr1G002500.3 , HORVU4Hr1G002500.2
Wheat TraesCS1B02G121500 , TraesCS4A02G297600 , TraesCS1D02G101800 , TraesCS4D02G014500 , TraesCS4D02G014500 , TraesCS4B02G016100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G147100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G424800 MKI67 FHA domain-interacting nucleolar phosphoprotein(PubMedID : 24906815)@RNA recognition motif containing protein, putative, expressed K14838: nucleolar protein 15
2 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
3 Sobic.006G011000 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12893: splicing factor, arginine/serine-rich 4/5/6
4 Sobic.009G187300 allyl alcohol dehydrogenase, putative, expressed -
5 Sobic.002G406600 RNA recognition motif containing protein, putative, expressed K14785: ESF2, ESF2/ABP1 family protein
6 Sobic.004G060600 expressed protein K13105: proline-rich protein PRCC
7 Sobic.001G408100 Yip1 domain containing protein, expressed -
8 Sobic.009G104000 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
9 Sobic.002G266800 expressed protein K18178: COA5, cytochrome c oxidase assembly factor 5
10 Sobic.010G008100 RNA recognition motif containing protein, putative, expressed -
11 Sobic.004G130200 ribosome biogenesis protein NEP1, putative, expressed K14568: EMG1, rRNA small subunit pseudouridine methyltransferase Nep1
12 Sobic.004G348900 expressed protein -
13 Sobic.003G436500 ubiquitin-fold modifier 1 precursor, putative, expressed K12162: ubiquitin-fold modifier 1
14 Sobic.002G298300 ubiquitin-related modifier 1, putative, expressed K12161: ubiquitin related modifier 1
15 Sobic.007G014900 STIP1 homology and U box-containing protein 1, putative, expressed K09561: STUB1, STIP1 homology and U-box containing protein 1
16 Sobic.004G018800 HVA22, putative, expressed -
17 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
18 Sobic.003G127700 split hand/foot malformation type 1, putative, expressed K10881: SHFM1, DSS1, 26 proteasome complex subunit DSS1
19 Sobic.006G244600 peptidyl-tRNA hydrolase, putative, expressed K04794: peptidyl-tRNA hydrolase, PTH2 family
20 Sobic.009G023801 - -


Gene co-expression network
sample Sobic001G147100 Sobic001G147100 Sobic003G424800 Sobic003G424800 Sobic001G147100--Sobic003G424800 Sobic001G404100 Sobic001G404100 Sobic001G147100--Sobic001G404100 Sobic006G011000 Sobic006G011000 Sobic001G147100--Sobic006G011000 Sobic009G187300 Sobic009G187300 Sobic001G147100--Sobic009G187300 Sobic002G406600 Sobic002G406600 Sobic001G147100--Sobic002G406600 Sobic004G060600 Sobic004G060600 Sobic001G147100--Sobic004G060600 Sobic001G408100 Sobic001G408100 Sobic001G147100--Sobic001G408100 Sobic009G104000 Sobic009G104000 Sobic001G147100--Sobic009G104000 Sobic002G266800 Sobic002G266800 Sobic001G147100--Sobic002G266800 Sobic001G117400 Sobic001G117400 Sobic003G424800--Sobic001G117400 Sobic002G116200 Sobic002G116200 Sobic003G424800--Sobic002G116200 Sobic002G413400 Sobic002G413400 Sobic003G424800--Sobic002G413400 Sobic003G424800--Sobic001G147100 Sobic003G362400 Sobic003G362400 Sobic003G424800--Sobic003G362400 Sobic001G529000 Sobic001G529000 Sobic003G424800--Sobic001G529000 Sobic010G008100 Sobic010G008100 Sobic003G424800--Sobic010G008100 Sobic009G008600 Sobic009G008600 Sobic003G424800--Sobic009G008600 Sobic001G331900 Sobic001G331900 Sobic003G424800--Sobic001G331900 Sobic002G341800 Sobic002G341800 Sobic001G404100--Sobic002G341800 Sobic001G481700 Sobic001G481700 Sobic001G404100--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic001G404100--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic001G404100--Sobic008G137600 Sobic001G404100--Sobic009G104000 Sobic001G096100 Sobic001G096100 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic009G212300 Sobic009G212300 Sobic001G404100--Sobic009G212300 Sobic006G252200 Sobic006G252200 Sobic001G404100--Sobic006G252200 Sobic006G094600 Sobic006G094600 Sobic006G011000--Sobic006G094600 Sobic001G329300 Sobic001G329300 Sobic006G011000--Sobic001G329300 Sobic002G204000 Sobic002G204000 Sobic006G011000--Sobic002G204000 Sobic006G011000--Sobic008G137600 Sobic006G011000--Sobic001G147100 Sobic006G109700 Sobic006G109700 Sobic006G011000--Sobic006G109700 Sobic001G532100 Sobic001G532100 Sobic006G011000--Sobic001G532100 Sobic010G163100 Sobic010G163100 Sobic006G011000--Sobic010G163100 Sobic003G402600 Sobic003G402600 Sobic006G011000--Sobic003G402600 Sobic009G187300--Sobic001G147100 Sobic010G260400 Sobic010G260400 Sobic009G187300--Sobic010G260400 Sobic001G148700 Sobic001G148700 Sobic009G187300--Sobic001G148700 Sobic001G441000 Sobic001G441000 Sobic009G187300--Sobic001G441000 Sobic009G187300--Sobic002G116200 Sobic001G533300 Sobic001G533300 Sobic009G187300--Sobic001G533300 Sobic007G068000 Sobic007G068000 Sobic009G187300--Sobic007G068000 Sobic009G149800 Sobic009G149800 Sobic009G187300--Sobic009G149800 Sobic001G224400 Sobic001G224400 Sobic009G187300--Sobic001G224400 Sobic009G138700 Sobic009G138700 Sobic002G406600--Sobic009G138700 Sobic004G130200 Sobic004G130200 Sobic002G406600--Sobic004G130200 Sobic002G406600--Sobic001G147100 Sobic002G086200 Sobic002G086200 Sobic002G406600--Sobic002G086200 Sobic002G406600--Sobic003G424800 Sobic010G247400 Sobic010G247400 Sobic002G406600--Sobic010G247400 Sobic003G397700 Sobic003G397700 Sobic002G406600--Sobic003G397700 Sobic010G051500 Sobic010G051500 Sobic002G406600--Sobic010G051500 Sobic007G039400 Sobic007G039400 Sobic002G406600--Sobic007G039400 Sobic003G077900 Sobic003G077900 Sobic004G060600--Sobic003G077900 Sobic002G400000 Sobic002G400000 Sobic004G060600--Sobic002G400000 Sobic009G131100 Sobic009G131100 Sobic004G060600--Sobic009G131100 Sobic001G428100 Sobic001G428100 Sobic004G060600--Sobic001G428100 Sobic007G203700 Sobic007G203700 Sobic004G060600--Sobic007G203700 Sobic009G198500 Sobic009G198500 Sobic004G060600--Sobic009G198500 Sobic007G168600 Sobic007G168600 Sobic004G060600--Sobic007G168600 Sobic003G117300 Sobic003G117300 Sobic004G060600--Sobic003G117300 Sobic001G364600 Sobic001G364600 Sobic004G060600--Sobic001G364600 Sobic003G217100 Sobic003G217100 Sobic001G408100--Sobic003G217100 Sobic003G052400 Sobic003G052400 Sobic001G408100--Sobic003G052400 Sobic009G171100 Sobic009G171100 Sobic001G408100--Sobic009G171100 Sobic010G017000 Sobic010G017000 Sobic001G408100--Sobic010G017000 Sobic003G043400 Sobic003G043400 Sobic001G408100--Sobic003G043400 Sobic006G222400 Sobic006G222400 Sobic001G408100--Sobic006G222400 Sobic001G214200 Sobic001G214200 Sobic001G408100--Sobic001G214200 Sobic004G025300 Sobic004G025300 Sobic001G408100--Sobic004G025300 Sobic003G038600 Sobic003G038600 Sobic001G408100--Sobic003G038600 Sobic009G104000--Sobic001G404100 Sobic009G104000--Sobic010G008100 Sobic010G038700 Sobic010G038700 Sobic009G104000--Sobic010G038700 Sobic001G440700 Sobic001G440700 Sobic009G104000--Sobic001G440700 Sobic009G104000--Sobic001G502200 Sobic007G132700 Sobic007G132700 Sobic009G104000--Sobic007G132700 Sobic001G067900 Sobic001G067900 Sobic009G104000--Sobic001G067900 Sobic010G062800 Sobic010G062800 Sobic009G104000--Sobic010G062800 Sobic009G179200 Sobic009G179200 Sobic009G104000--Sobic009G179200 Sobic009G199700 Sobic009G199700 Sobic002G266800--Sobic009G199700 Sobic006G266100 Sobic006G266100 Sobic002G266800--Sobic006G266100 Sobic002G378401 Sobic002G378401 Sobic002G266800--Sobic002G378401 Sobic002G266800--Sobic001G147100 Sobic002G298300 Sobic002G298300 Sobic002G266800--Sobic002G298300 Sobic002G266800--Sobic001G148700 Sobic002G123200 Sobic002G123200 Sobic002G266800--Sobic002G123200 Sobic006G099800 Sobic006G099800 Sobic002G266800--Sobic006G099800 Sobic003G434000 Sobic003G434000 Sobic002G266800--Sobic003G434000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.