Gene annotation
Transcriptome id Sobic.006G244600.1
Synonym Sb06g031040
Functional annotation peptidyl-tRNA hydrolase, putative, expressed
UniProt C5Y9F8
Pfam PF01981
Panther DB PTHR12649 PTHR12649:SF11
NCBI CDD KOG3282; Uncharacterized conserved protein
KEGG Orthology K04794; peptidyl-tRNA hydrolase, PTH2 family
Gene Ontology GO:0004045; aminoacyl-tRNA hydrolase activity


Orthologs (automatic annotation)
TAIR AT3G03010 : Peptidyl-tRNA hydrolase II (PTH2) family protein
RAP-DB (Rice) LOC_Os04g55860.1 : peptidyl-tRNA hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a057233
Brachypodium PNT62036 , KQJ85029 , KQJ85030
Barley HORVU2Hr1G112600.2 , HORVU2Hr1G112600.3 , HORVU2Hr1G112600.1 , HORVU2Hr1G112600.4
Wheat TraesCS2A02G507200 , TraesCS2D02G507600
Populus PNS90561 , PNS90559 , PNT07354 , PNS90558


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cDNA sequences
Sobic.006G244600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G147100 pre-rRNA-processing protein TSR2, putative, expressed K14800: pre-rRNA-processing protein TSR2
2 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
3 Sobic.008G118500 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
4 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
5 Sobic.004G019600 histone deacetylase complex subunit SAP18, putative, expressed K14324: histone deacetylase complex subunit SAP18
6 Sobic.010G051500 Ser/Thr protein phosphatase family protein, putative, expressed K06269: serine/threonine-protein phosphatase PP1 catalytic subunit
7 Sobic.002G262000 ankyrin repeat domain containing protein, putative, expressed -
8 Sobic.003G424800 MKI67 FHA domain-interacting nucleolar phosphoprotein(PubMedID : 24906815)@RNA recognition motif containing protein, putative, expressed K14838: nucleolar protein 15
9 Sobic.003G117300 LSM domain containing protein, expressed K12623: U6 snRNA-associated Sm-like protein LSm4
10 Sobic.004G130200 ribosome biogenesis protein NEP1, putative, expressed K14568: EMG1, rRNA small subunit pseudouridine methyltransferase Nep1
11 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
12 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
13 Sobic.001G382200 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
14 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
15 Sobic.004G018800 HVA22, putative, expressed -
16 Sobic.002G359900 nuclear transport factor 2, putative, expressed -
17 Sobic.001G346300 WD domain, G-beta repeat domain containing protein, expressed K12816: CDC40, pre-mRNA-processing factor 17
18 Sobic.008G016100 WD domain, G-beta repeat domain containing protein, expressed K14848: RRB1, ribosome assembly protein RRB1
19 Sobic.002G419100 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
20 Sobic.008G162000 rhodanese-like domain containing protein, putative, expressed K01011: TST, MPST, thiosulfate/3-mercaptopyruvate sulfurtransferase


Gene co-expression network
sample Sobic006G244600 Sobic006G244600 Sobic001G147100 Sobic001G147100 Sobic006G244600--Sobic001G147100 Sobic001G404100 Sobic001G404100 Sobic006G244600--Sobic001G404100 Sobic008G118500 Sobic008G118500 Sobic006G244600--Sobic008G118500 Sobic010G220900 Sobic010G220900 Sobic006G244600--Sobic010G220900 Sobic004G019600 Sobic004G019600 Sobic006G244600--Sobic004G019600 Sobic010G051500 Sobic010G051500 Sobic006G244600--Sobic010G051500 Sobic002G262000 Sobic002G262000 Sobic006G244600--Sobic002G262000 Sobic003G424800 Sobic003G424800 Sobic006G244600--Sobic003G424800 Sobic003G117300 Sobic003G117300 Sobic006G244600--Sobic003G117300 Sobic001G147100--Sobic003G424800 Sobic001G147100--Sobic001G404100 Sobic006G011000 Sobic006G011000 Sobic001G147100--Sobic006G011000 Sobic009G187300 Sobic009G187300 Sobic001G147100--Sobic009G187300 Sobic002G406600 Sobic002G406600 Sobic001G147100--Sobic002G406600 Sobic004G060600 Sobic004G060600 Sobic001G147100--Sobic004G060600 Sobic001G408100 Sobic001G408100 Sobic001G147100--Sobic001G408100 Sobic009G104000 Sobic009G104000 Sobic001G147100--Sobic009G104000 Sobic002G266800 Sobic002G266800 Sobic001G147100--Sobic002G266800 Sobic002G341800 Sobic002G341800 Sobic001G404100--Sobic002G341800 Sobic001G481700 Sobic001G481700 Sobic001G404100--Sobic001G481700 Sobic001G502200 Sobic001G502200 Sobic001G404100--Sobic001G502200 Sobic008G137600 Sobic008G137600 Sobic001G404100--Sobic008G137600 Sobic001G404100--Sobic009G104000 Sobic001G096100 Sobic001G096100 Sobic001G404100--Sobic001G096100 Sobic002G428200 Sobic002G428200 Sobic001G404100--Sobic002G428200 Sobic009G212300 Sobic009G212300 Sobic001G404100--Sobic009G212300 Sobic006G252200 Sobic006G252200 Sobic001G404100--Sobic006G252200 Sobic001G178400 Sobic001G178400 Sobic008G118500--Sobic001G178400 Sobic006G087100 Sobic006G087100 Sobic008G118500--Sobic006G087100 Sobic009G102900 Sobic009G102900 Sobic008G118500--Sobic009G102900 Sobic009G002000 Sobic009G002000 Sobic008G118500--Sobic009G002000 Sobic008G118500--Sobic010G220900 Sobic001G469200 Sobic001G469200 Sobic008G118500--Sobic001G469200 Sobic001G291800 Sobic001G291800 Sobic008G118500--Sobic001G291800 Sobic009G258400 Sobic009G258400 Sobic008G118500--Sobic009G258400 Sobic001G346300 Sobic001G346300 Sobic008G118500--Sobic001G346300 Sobic010G220900--Sobic006G087100 Sobic010G220900--Sobic004G019600 Sobic010G220900--Sobic009G258400 Sobic001G532100 Sobic001G532100 Sobic010G220900--Sobic001G532100 Sobic009G201800 Sobic009G201800 Sobic010G220900--Sobic009G201800 Sobic010G220900--Sobic009G212300 Sobic004G249300 Sobic004G249300 Sobic010G220900--Sobic004G249300 Sobic010G220900--Sobic008G118500 Sobic010G220900--Sobic001G469200 Sobic002G204000 Sobic002G204000 Sobic004G019600--Sobic002G204000 Sobic004G019600--Sobic001G346300 Sobic001G114500 Sobic001G114500 Sobic004G019600--Sobic001G114500 Sobic004G019600--Sobic010G220900 Sobic004G019600--Sobic006G087100 Sobic001G152000 Sobic001G152000 Sobic004G019600--Sobic001G152000 Sobic004G019600--Sobic009G258400 Sobic004G212700 Sobic004G212700 Sobic004G019600--Sobic004G212700 Sobic009G231900 Sobic009G231900 Sobic004G019600--Sobic009G231900 Sobic004G018800 Sobic004G018800 Sobic010G051500--Sobic004G018800 Sobic010G051500--Sobic001G532100 Sobic001G285300 Sobic001G285300 Sobic010G051500--Sobic001G285300 Sobic007G203700 Sobic007G203700 Sobic010G051500--Sobic007G203700 Sobic003G316850 Sobic003G316850 Sobic010G051500--Sobic003G316850 Sobic006G143500 Sobic006G143500 Sobic010G051500--Sobic006G143500 Sobic010G051500--Sobic003G424800 Sobic010G051500--Sobic004G019600 Sobic010G193800 Sobic010G193800 Sobic010G051500--Sobic010G193800 Sobic004G356900 Sobic004G356900 Sobic002G262000--Sobic004G356900 Sobic002G071000 Sobic002G071000 Sobic002G262000--Sobic002G071000 Sobic002G262000--Sobic003G117300 Sobic010G108900 Sobic010G108900 Sobic002G262000--Sobic010G108900 Sobic006G049700 Sobic006G049700 Sobic002G262000--Sobic006G049700 Sobic001G234200 Sobic001G234200 Sobic002G262000--Sobic001G234200 Sobic006G183000 Sobic006G183000 Sobic002G262000--Sobic006G183000 Sobic004G232800 Sobic004G232800 Sobic002G262000--Sobic004G232800 Sobic004G348900 Sobic004G348900 Sobic002G262000--Sobic004G348900 Sobic001G117400 Sobic001G117400 Sobic003G424800--Sobic001G117400 Sobic002G116200 Sobic002G116200 Sobic003G424800--Sobic002G116200 Sobic002G413400 Sobic002G413400 Sobic003G424800--Sobic002G413400 Sobic003G424800--Sobic001G147100 Sobic003G362400 Sobic003G362400 Sobic003G424800--Sobic003G362400 Sobic001G529000 Sobic001G529000 Sobic003G424800--Sobic001G529000 Sobic010G008100 Sobic010G008100 Sobic003G424800--Sobic010G008100 Sobic009G008600 Sobic009G008600 Sobic003G424800--Sobic009G008600 Sobic001G331900 Sobic001G331900 Sobic003G424800--Sobic001G331900 Sobic003G117300--Sobic004G060600 Sobic001G428100 Sobic001G428100 Sobic003G117300--Sobic001G428100 Sobic003G117300--Sobic002G071000 Sobic003G117300--Sobic001G404100 Sobic003G117300--Sobic002G262000 Sobic001G501200 Sobic001G501200 Sobic003G117300--Sobic001G501200 Sobic009G130400 Sobic009G130400 Sobic003G117300--Sobic009G130400 Sobic006G281200 Sobic006G281200 Sobic003G117300--Sobic006G281200 Sobic003G077900 Sobic003G077900 Sobic003G117300--Sobic003G077900
Octagon: transcription factors


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