Gene annotation
Transcriptome id Sobic.001G178400.1
Synonym Sb01g015530, ATKRS-1
Functional annotation tRNA synthetases class II domain containing protein, expressed
UniProt C5WU56
Pfam PF01336 PF00152
Panther DB PTHR22594 PTHR22594:SF35
NCBI CDD -
KEGG Orthology K04567; KARS, lysyl-tRNA synthetase, class II
Gene Ontology GO:0003676; nucleic acid binding GO:0006418tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT3G11710 : lysyl-tRNA synthetase 1
RAP-DB (Rice) LOC_Os03g38980.1 : tRNA synthetases class II domain containing protein, expressed
MaizeGDB (Corn) Zm00025a007133 , Zm00025a032931 , Zm00025a017349
Brachypodium KQK14314
Barley HORVU5Hr1G106380.9 , HORVU5Hr1G106380.8 , HORVU5Hr1G106380.1 , HORVU5Hr1G106380.3 , HORVU5Hr1G106380.2 , HORVU5Hr1G106380.5 , HORVU5Hr1G106380.4 , HORVU5Hr1G106380.7 , HORVU5Hr1G106380.6
Wheat TraesCS4B02G033800 , TraesCS5A02G442200 , TraesCS5A02G442200 , TraesCS4D02G032900 , TraesCS4D02G032900 , TraesCS4D02G032900 , TraesCS4D02G032900 , TraesCS5B02G446300 , TraesCS5D02G449600 , TraesCS5D02G449600 , TraesCS5B02G446300 , TraesCS3B02G282000 , TraesCS3B02G282000
Populus -


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cDNA sequences
Sobic.001G178400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G118500 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
2 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
3 Sobic.009G102900 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
4 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
5 Sobic.001G469200 proteasome subunit, putative, expressed K12178: COPS4, COP9 signalosome complex subunit 4
6 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
7 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
8 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
9 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.010G206300 tRNA synthetase class I, putative, expressed K01870: IARS, isoleucyl-tRNA synthetase
11 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
12 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
13 Sobic.001G346300 WD domain, G-beta repeat domain containing protein, expressed K12816: CDC40, pre-mRNA-processing factor 17
14 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein
15 Sobic.009G045900 tRNA synthetase class II core domain containing protein, expressed K01892: HARS, histidyl-tRNA synthetase
16 Sobic.002G341800 eukaryotic translation initiation factor 2 subunit gamma, putative, expressed K03242: translation initiation factor 2 subunit 3
17 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
18 Sobic.009G175300 bifunctional aminoacyl-tRNA synthetase, putative, expressed K01881: PARS, prolyl-tRNA synthetase
19 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
20 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19


Gene co-expression network
sample Sobic001G178400 Sobic001G178400 Sobic008G118500 Sobic008G118500 Sobic001G178400--Sobic008G118500 Sobic001G291800 Sobic001G291800 Sobic001G178400--Sobic001G291800 Sobic009G102900 Sobic009G102900 Sobic001G178400--Sobic009G102900 Sobic001G007800 Sobic001G007800 Sobic001G178400--Sobic001G007800 Sobic001G469200 Sobic001G469200 Sobic001G178400--Sobic001G469200 Sobic001G455800 Sobic001G455800 Sobic001G178400--Sobic001G455800 Sobic004G307500 Sobic004G307500 Sobic001G178400--Sobic004G307500 Sobic002G365900 Sobic002G365900 Sobic001G178400--Sobic002G365900 Sobic008G160000 Sobic008G160000 Sobic001G178400--Sobic008G160000 Sobic008G118500--Sobic001G178400 Sobic006G087100 Sobic006G087100 Sobic008G118500--Sobic006G087100 Sobic008G118500--Sobic009G102900 Sobic009G002000 Sobic009G002000 Sobic008G118500--Sobic009G002000 Sobic010G220900 Sobic010G220900 Sobic008G118500--Sobic010G220900 Sobic008G118500--Sobic001G469200 Sobic008G118500--Sobic001G291800 Sobic009G258400 Sobic009G258400 Sobic008G118500--Sobic009G258400 Sobic001G346300 Sobic001G346300 Sobic008G118500--Sobic001G346300 Sobic004G340400 Sobic004G340400 Sobic001G291800--Sobic004G340400 Sobic001G145400 Sobic001G145400 Sobic001G291800--Sobic001G145400 Sobic005G115500 Sobic005G115500 Sobic001G291800--Sobic005G115500 Sobic004G353000 Sobic004G353000 Sobic001G291800--Sobic004G353000 Sobic010G186600 Sobic010G186600 Sobic001G291800--Sobic010G186600 Sobic009G255600 Sobic009G255600 Sobic001G291800--Sobic009G255600 Sobic008G147200 Sobic008G147200 Sobic001G291800--Sobic008G147200 Sobic007G039400 Sobic007G039400 Sobic001G291800--Sobic007G039400 Sobic001G168900 Sobic001G168900 Sobic001G291800--Sobic001G168900 Sobic001G115500 Sobic001G115500 Sobic009G102900--Sobic001G115500 Sobic003G198300 Sobic003G198300 Sobic009G102900--Sobic003G198300 Sobic009G102900--Sobic001G178400 Sobic004G249300 Sobic004G249300 Sobic009G102900--Sobic004G249300 Sobic009G102900--Sobic008G118500 Sobic009G102900--Sobic009G002000 Sobic001G008500 Sobic001G008500 Sobic009G102900--Sobic001G008500 Sobic009G102900--Sobic001G346300 Sobic004G047200 Sobic004G047200 Sobic009G102900--Sobic004G047200 Sobic002G150700 Sobic002G150700 Sobic001G007800--Sobic002G150700 Sobic001G007800--Sobic004G307500 Sobic001G007800--Sobic004G340400 Sobic007G143500 Sobic007G143500 Sobic001G007800--Sobic007G143500 Sobic001G334100 Sobic001G334100 Sobic001G007800--Sobic001G334100 Sobic009G235000 Sobic009G235000 Sobic001G007800--Sobic009G235000 Sobic006G193300 Sobic006G193300 Sobic001G007800--Sobic006G193300 Sobic001G007800--Sobic008G160000 Sobic007G089800 Sobic007G089800 Sobic001G007800--Sobic007G089800 Sobic002G199400 Sobic002G199400 Sobic001G469200--Sobic002G199400 Sobic001G469200--Sobic001G115500 Sobic001G085800 Sobic001G085800 Sobic001G469200--Sobic001G085800 Sobic001G469200--Sobic005G115500 Sobic003G132000 Sobic003G132000 Sobic001G469200--Sobic003G132000 Sobic004G075200 Sobic004G075200 Sobic001G469200--Sobic004G075200 Sobic010G108900 Sobic010G108900 Sobic001G469200--Sobic010G108900 Sobic006G245700 Sobic006G245700 Sobic001G469200--Sobic006G245700 Sobic001G487100 Sobic001G487100 Sobic001G469200--Sobic001G487100 Sobic009G016400 Sobic009G016400 Sobic001G455800--Sobic009G016400 Sobic001G455800--Sobic002G150700 Sobic006G196300 Sobic006G196300 Sobic001G455800--Sobic006G196300 Sobic001G455800--Sobic004G340400 Sobic002G371700 Sobic002G371700 Sobic001G455800--Sobic002G371700 Sobic001G447300 Sobic001G447300 Sobic001G455800--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic001G455800--Sobic002G142900 Sobic001G455800--Sobic008G160000 Sobic001G455800--Sobic001G145400 Sobic004G307500--Sobic001G168900 Sobic001G524400 Sobic001G524400 Sobic004G307500--Sobic001G524400 Sobic002G077900 Sobic002G077900 Sobic004G307500--Sobic002G077900 Sobic002G005000 Sobic002G005000 Sobic004G307500--Sobic002G005000 Sobic004G307500--Sobic009G258400 Sobic004G307500--Sobic001G291800 Sobic004G307500--Sobic007G143500 Sobic004G307500--Sobic001G007800 Sobic001G527300 Sobic001G527300 Sobic004G307500--Sobic001G527300 Sobic006G251600 Sobic006G251600 Sobic002G365900--Sobic006G251600 Sobic003G008600 Sobic003G008600 Sobic002G365900--Sobic003G008600 Sobic002G365900--Sobic001G008500 Sobic002G423500 Sobic002G423500 Sobic002G365900--Sobic002G423500 Sobic009G071700 Sobic009G071700 Sobic002G365900--Sobic009G071700 Sobic004G252000 Sobic004G252000 Sobic002G365900--Sobic004G252000 Sobic001G488100 Sobic001G488100 Sobic002G365900--Sobic001G488100 Sobic010G205900 Sobic010G205900 Sobic002G365900--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic002G365900--Sobic004G173100 Sobic008G160000--Sobic004G340400 Sobic008G160000--Sobic001G455800 Sobic001G259000 Sobic001G259000 Sobic008G160000--Sobic001G259000 Sobic009G138700 Sobic009G138700 Sobic008G160000--Sobic009G138700 Sobic008G160000--Sobic002G150700 Sobic008G160000--Sobic009G016400 Sobic008G160000--Sobic001G145400 Sobic006G002800 Sobic006G002800 Sobic008G160000--Sobic006G002800 Sobic004G224600 Sobic004G224600 Sobic008G160000--Sobic004G224600
Octagon: transcription factors


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