Gene annotation
Transcriptome id Sobic.003G198300.1
Synonym Sb03g026080
Functional annotation ZOS1-11 - C2H2 zinc finger protein, expressed
UniProt C5XNV4
Pfam PF12874 PF08790
Panther DB PTHR13100 PTHR13100:SF10
NCBI CDD KOG2186; Cell growth-regulating nucleolar protein
KEGG Orthology K15263; cell growth-regulating nucleolar protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G19385 : zinc ion binding
RAP-DB (Rice) LOC_Os01g40110.1 : ZOS1-11 - C2H2 zinc finger protein, expressed
MaizeGDB (Corn) Zm00025a038384
Brachypodium -
Barley HORVU3Hr1G050320.2 , HORVU3Hr1G050320.4 , HORVU3Hr1G050320.1 , HORVU3Hr1G050320.3
Wheat TraesCS3A02G209300 , TraesCS3A02G209300 , TraesCS3D02G212200 , TraesCS3D02G212200 , TraesCS3B02G239900 , TraesCS3B02G239900
Populus -


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cDNA sequences
Sobic.003G198300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G258500 notchless protein, putative, expressed K14855: RSA4, ribosome assembly protein 4
2 Sobic.009G102900 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
3 Sobic.009G211700 ZOS5-12 - C2H2 zinc finger protein, expressed -
4 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
5 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
6 Sobic.008G115600 RNA polymerase Rpb7, N-terminal domain containing protein, expressed -
7 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
8 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
9 Sobic.004G307500 phenylalanyl-tRNA synthetase, putative, expressed K01889: FARSA, phenylalanyl-tRNA synthetase alpha chain
10 Sobic.001G346300 WD domain, G-beta repeat domain containing protein, expressed K12816: CDC40, pre-mRNA-processing factor 17
11 Sobic.004G010700 expressed protein -
12 Sobic.001G382200 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
13 Sobic.009G040500 glioma tumor suppressor candidate region gene 2 protein, putative, expressed K14840: NOP53, nucleolar protein 53
14 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
15 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
16 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
17 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
18 Sobic.004G272400 AAA-type ATPase family protein, putative, expressed K17681: ATPase family AAA domain-containing protein 3A/B
19 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
20 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha


Gene co-expression network
sample Sobic003G198300 Sobic003G198300 Sobic009G258500 Sobic009G258500 Sobic003G198300--Sobic009G258500 Sobic009G102900 Sobic009G102900 Sobic003G198300--Sobic009G102900 Sobic009G211700 Sobic009G211700 Sobic003G198300--Sobic009G211700 Sobic004G249300 Sobic004G249300 Sobic003G198300--Sobic004G249300 Sobic001G371100 Sobic001G371100 Sobic003G198300--Sobic001G371100 Sobic008G115600 Sobic008G115600 Sobic003G198300--Sobic008G115600 Sobic009G201800 Sobic009G201800 Sobic003G198300--Sobic009G201800 Sobic006G251600 Sobic006G251600 Sobic003G198300--Sobic006G251600 Sobic004G307500 Sobic004G307500 Sobic003G198300--Sobic004G307500 Sobic001G382200 Sobic001G382200 Sobic009G258500--Sobic001G382200 Sobic004G010700 Sobic004G010700 Sobic009G258500--Sobic004G010700 Sobic009G258500--Sobic009G201800 Sobic009G258500--Sobic003G198300 Sobic006G226500 Sobic006G226500 Sobic009G258500--Sobic006G226500 Sobic004G252000 Sobic004G252000 Sobic009G258500--Sobic004G252000 Sobic004G047200 Sobic004G047200 Sobic009G258500--Sobic004G047200 Sobic008G016100 Sobic008G016100 Sobic009G258500--Sobic008G016100 Sobic009G258500--Sobic004G249300 Sobic001G115500 Sobic001G115500 Sobic009G102900--Sobic001G115500 Sobic009G102900--Sobic003G198300 Sobic001G178400 Sobic001G178400 Sobic009G102900--Sobic001G178400 Sobic009G102900--Sobic004G249300 Sobic008G118500 Sobic008G118500 Sobic009G102900--Sobic008G118500 Sobic009G002000 Sobic009G002000 Sobic009G102900--Sobic009G002000 Sobic001G008500 Sobic001G008500 Sobic009G102900--Sobic001G008500 Sobic001G346300 Sobic001G346300 Sobic009G102900--Sobic001G346300 Sobic009G102900--Sobic004G047200 Sobic003G160900 Sobic003G160900 Sobic009G211700--Sobic003G160900 Sobic001G091900 Sobic001G091900 Sobic009G211700--Sobic001G091900 Sobic009G211700--Sobic001G371100 Sobic009G040500 Sobic009G040500 Sobic009G211700--Sobic009G040500 Sobic005G027300 Sobic005G027300 Sobic009G211700--Sobic005G027300 Sobic009G211700--Sobic003G198300 Sobic004G326600 Sobic004G326600 Sobic009G211700--Sobic004G326600 Sobic006G098500 Sobic006G098500 Sobic009G211700--Sobic006G098500 Sobic001G230200 Sobic001G230200 Sobic009G211700--Sobic001G230200 Sobic002G341800 Sobic002G341800 Sobic004G249300--Sobic002G341800 Sobic004G249300--Sobic009G201800 Sobic004G249300--Sobic001G115500 Sobic002G077900 Sobic002G077900 Sobic004G249300--Sobic002G077900 Sobic008G083400 Sobic008G083400 Sobic004G249300--Sobic008G083400 Sobic010G247400 Sobic010G247400 Sobic004G249300--Sobic010G247400 Sobic003G118400 Sobic003G118400 Sobic004G249300--Sobic003G118400 Sobic004G249300--Sobic009G102900 Sobic001G370300 Sobic001G370300 Sobic004G249300--Sobic001G370300 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic001G371100--Sobic006G251600 Sobic001G371100--Sobic004G047200 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200 Sobic008G115600--Sobic003G198300 Sobic008G115600--Sobic009G201800 Sobic004G272900 Sobic004G272900 Sobic008G115600--Sobic004G272900 Sobic001G436300 Sobic001G436300 Sobic008G115600--Sobic001G436300 Sobic006G127500 Sobic006G127500 Sobic008G115600--Sobic006G127500 Sobic010G141600 Sobic010G141600 Sobic008G115600--Sobic010G141600 Sobic008G115600--Sobic001G115500 Sobic008G115600--Sobic004G010700 Sobic008G115600--Sobic009G258500 Sobic002G044000 Sobic002G044000 Sobic009G201800--Sobic002G044000 Sobic009G201800--Sobic004G010700 Sobic009G201800--Sobic004G249300 Sobic009G201800--Sobic001G382200 Sobic009G201800--Sobic009G258500 Sobic009G212300 Sobic009G212300 Sobic009G201800--Sobic009G212300 Sobic001G285300 Sobic001G285300 Sobic009G201800--Sobic001G285300 Sobic009G234400 Sobic009G234400 Sobic009G201800--Sobic009G234400 Sobic003G028100 Sobic003G028100 Sobic009G201800--Sobic003G028100 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic006G251600--Sobic001G008500 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic006G251600--Sobic001G371100 Sobic001G168900 Sobic001G168900 Sobic004G307500--Sobic001G168900 Sobic001G524400 Sobic001G524400 Sobic004G307500--Sobic001G524400 Sobic004G307500--Sobic002G077900 Sobic002G005000 Sobic002G005000 Sobic004G307500--Sobic002G005000 Sobic009G258400 Sobic009G258400 Sobic004G307500--Sobic009G258400 Sobic001G291800 Sobic001G291800 Sobic004G307500--Sobic001G291800 Sobic007G143500 Sobic007G143500 Sobic004G307500--Sobic007G143500 Sobic001G007800 Sobic001G007800 Sobic004G307500--Sobic001G007800 Sobic001G527300 Sobic001G527300 Sobic004G307500--Sobic001G527300
Octagon: transcription factors


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