Gene annotation
Transcriptome id Sobic.009G258500.1
Synonym Sb09g030800
Functional annotation notchless protein, putative, expressed
UniProt C5YX28
Pfam PF08154 PF00400
Panther DB PTHR19848 PTHR19848:SF0
NCBI CDD -
KEGG Orthology K14855; RSA4, ribosome assembly protein 4
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G52820 : WD-40 repeat family protein / notchless protein, putative
RAP-DB (Rice) LOC_Os11g38170.1 : notchless protein, putative, expressed
MaizeGDB (Corn) Zm00025a044794
Brachypodium KQK04558
Barley HORVU1Hr1G095080.1 , HORVU1Hr1G095080.2
Wheat TraesCS1D02G451700 , TraesCS1B02G478100 , TraesCS1A02G443600
Populus -


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cDNA sequences
Sobic.009G258500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G382200 eukaryotic translation initiation factor 2 subunit beta, putative, expressed K03238: translation initiation factor 2 subunit 2
2 Sobic.004G010700 expressed protein -
3 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
4 Sobic.003G198300 ZOS1-11 - C2H2 zinc finger protein, expressed K15263: cell growth-regulating nucleolar protein
5 Sobic.006G226500 h/ACA ribonucleoprotein complex subunit 3, putative, expressed K11130: NOP10, H/ACA ribonucleoprotein complex subunit 3
6 Sobic.004G252000 expressed protein K14545: ribosomal RNA-processing protein 7
7 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta
8 Sobic.008G016100 WD domain, G-beta repeat domain containing protein, expressed K14848: RRB1, ribosome assembly protein RRB1
9 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
10 Sobic.002G277200 rRNA-processing protein FCF, putative, expressed K14773: U3 small nucleolar RNA-associated protein 23
11 Sobic.009G002000 ankyrin repeat family protein, putative, expressed -
12 Sobic.001G404100 expressed protein K03237: translation initiation factor 2 subunit 1
13 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
14 Sobic.002G116500 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6
15 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
16 Sobic.002G386300 exosome complex exonuclease, putative, expressed K12587: MTR3, exosome complex component MTR3
17 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
18 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
19 Sobic.001G530800 T-complex protein, putative, expressed K09496: T-complex protein 1 subunit delta
20 Sobic.002G101000 mitochondrial prohibitin complex protein 2, putative, expressed K17081: prohibitin 2


Gene co-expression network
sample Sobic009G258500 Sobic009G258500 Sobic001G382200 Sobic001G382200 Sobic009G258500--Sobic001G382200 Sobic004G010700 Sobic004G010700 Sobic009G258500--Sobic004G010700 Sobic009G201800 Sobic009G201800 Sobic009G258500--Sobic009G201800 Sobic003G198300 Sobic003G198300 Sobic009G258500--Sobic003G198300 Sobic006G226500 Sobic006G226500 Sobic009G258500--Sobic006G226500 Sobic004G252000 Sobic004G252000 Sobic009G258500--Sobic004G252000 Sobic004G047200 Sobic004G047200 Sobic009G258500--Sobic004G047200 Sobic008G016100 Sobic008G016100 Sobic009G258500--Sobic008G016100 Sobic004G249300 Sobic004G249300 Sobic009G258500--Sobic004G249300 Sobic001G382200--Sobic009G258500 Sobic001G382200--Sobic009G201800 Sobic003G118400 Sobic003G118400 Sobic001G382200--Sobic003G118400 Sobic002G341800 Sobic002G341800 Sobic001G382200--Sobic002G341800 Sobic009G234400 Sobic009G234400 Sobic001G382200--Sobic009G234400 Sobic002G394600 Sobic002G394600 Sobic001G382200--Sobic002G394600 Sobic001G382200--Sobic008G016100 Sobic001G382200--Sobic004G010700 Sobic001G530800 Sobic001G530800 Sobic001G382200--Sobic001G530800 Sobic004G010700--Sobic009G201800 Sobic004G010700--Sobic009G258500 Sobic002G054000 Sobic002G054000 Sobic004G010700--Sobic002G054000 Sobic002G101000 Sobic002G101000 Sobic004G010700--Sobic002G101000 Sobic002G277200 Sobic002G277200 Sobic004G010700--Sobic002G277200 Sobic006G129900 Sobic006G129900 Sobic004G010700--Sobic006G129900 Sobic004G010700--Sobic001G382200 Sobic004G010700--Sobic009G234400 Sobic009G104100 Sobic009G104100 Sobic004G010700--Sobic009G104100 Sobic002G044000 Sobic002G044000 Sobic009G201800--Sobic002G044000 Sobic009G201800--Sobic004G010700 Sobic009G201800--Sobic004G249300 Sobic009G201800--Sobic001G382200 Sobic009G201800--Sobic009G258500 Sobic009G212300 Sobic009G212300 Sobic009G201800--Sobic009G212300 Sobic001G285300 Sobic001G285300 Sobic009G201800--Sobic001G285300 Sobic009G201800--Sobic009G234400 Sobic003G028100 Sobic003G028100 Sobic009G201800--Sobic003G028100 Sobic003G198300--Sobic009G258500 Sobic009G102900 Sobic009G102900 Sobic003G198300--Sobic009G102900 Sobic009G211700 Sobic009G211700 Sobic003G198300--Sobic009G211700 Sobic003G198300--Sobic004G249300 Sobic001G371100 Sobic001G371100 Sobic003G198300--Sobic001G371100 Sobic008G115600 Sobic008G115600 Sobic003G198300--Sobic008G115600 Sobic003G198300--Sobic009G201800 Sobic006G251600 Sobic006G251600 Sobic003G198300--Sobic006G251600 Sobic004G307500 Sobic004G307500 Sobic003G198300--Sobic004G307500 Sobic010G100000 Sobic010G100000 Sobic006G226500--Sobic010G100000 Sobic001G505500 Sobic001G505500 Sobic006G226500--Sobic001G505500 Sobic001G018800 Sobic001G018800 Sobic006G226500--Sobic001G018800 Sobic003G280700 Sobic003G280700 Sobic006G226500--Sobic003G280700 Sobic002G331300 Sobic002G331300 Sobic006G226500--Sobic002G331300 Sobic009G144300 Sobic009G144300 Sobic006G226500--Sobic009G144300 Sobic005G050500 Sobic005G050500 Sobic006G226500--Sobic005G050500 Sobic001G334300 Sobic001G334300 Sobic006G226500--Sobic001G334300 Sobic005G091700 Sobic005G091700 Sobic006G226500--Sobic005G091700 Sobic002G423500 Sobic002G423500 Sobic004G252000--Sobic002G423500 Sobic004G326600 Sobic004G326600 Sobic004G252000--Sobic004G326600 Sobic002G014400 Sobic002G014400 Sobic004G252000--Sobic002G014400 Sobic009G235000 Sobic009G235000 Sobic004G252000--Sobic009G235000 Sobic004G252000--Sobic009G258500 Sobic002G365900 Sobic002G365900 Sobic004G252000--Sobic002G365900 Sobic004G252000--Sobic004G047200 Sobic006G135900 Sobic006G135900 Sobic004G252000--Sobic006G135900 Sobic006G084000 Sobic006G084000 Sobic004G252000--Sobic006G084000 Sobic004G047200--Sobic004G326600 Sobic004G047200--Sobic002G423500 Sobic004G047200--Sobic002G014400 Sobic001G008500 Sobic001G008500 Sobic004G047200--Sobic001G008500 Sobic005G163700 Sobic005G163700 Sobic004G047200--Sobic005G163700 Sobic004G047200--Sobic001G530800 Sobic004G215700 Sobic004G215700 Sobic004G047200--Sobic004G215700 Sobic001G460500 Sobic001G460500 Sobic004G047200--Sobic001G460500 Sobic004G047200--Sobic001G371100 Sobic003G408300 Sobic003G408300 Sobic008G016100--Sobic003G408300 Sobic002G116500 Sobic002G116500 Sobic008G016100--Sobic002G116500 Sobic008G016100--Sobic001G382200 Sobic008G016100--Sobic006G135900 Sobic008G016100--Sobic009G258500 Sobic001G193500 Sobic001G193500 Sobic008G016100--Sobic001G193500 Sobic001G471000 Sobic001G471000 Sobic008G016100--Sobic001G471000 Sobic009G219400 Sobic009G219400 Sobic008G016100--Sobic009G219400 Sobic001G007800 Sobic001G007800 Sobic008G016100--Sobic001G007800 Sobic004G249300--Sobic002G341800 Sobic004G249300--Sobic009G201800 Sobic001G115500 Sobic001G115500 Sobic004G249300--Sobic001G115500 Sobic002G077900 Sobic002G077900 Sobic004G249300--Sobic002G077900 Sobic008G083400 Sobic008G083400 Sobic004G249300--Sobic008G083400 Sobic010G247400 Sobic010G247400 Sobic004G249300--Sobic010G247400 Sobic004G249300--Sobic003G118400 Sobic004G249300--Sobic009G102900 Sobic001G370300 Sobic001G370300 Sobic004G249300--Sobic001G370300
Octagon: transcription factors


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