Gene annotation
Transcriptome id Sobic.009G002000.1
Synonym Sb09g000390
Functional annotation ankyrin repeat family protein, putative, expressed
UniProt C5YXY8
Pfam PF00515 PF13414 PF13637 PF12796
Panther DB PTHR22904 PTHR22904:SF383
NCBI CDD KOG4412; 26S proteasome regulatory complex, subunit PSMD10
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G04710 : ankyrin repeat family protein
RAP-DB (Rice) LOC_Os05g01310.1 : ankyrin repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a038295
Brachypodium KQK08138
Barley HORVU1Hr1G000960.10 , HORVU1Hr1G000960.11 , HORVU1Hr1G000960.1 , HORVU1Hr1G000960.8 , HORVU1Hr1G000960.9 , HORVU1Hr1G000960.2 , HORVU1Hr1G000960.3 , HORVU1Hr1G000960.4 , HORVU1Hr1G000960.5 , HORVU1Hr1G000960.6 , HORVU1Hr1G000960.7
Wheat TraesCS1B02G013900 , TraesCS1D02G007800 , TraesCS1D02G007800 , TraesCS1D02G007800 , TraesCS1A02G009000 , TraesCS1A02G009000 , TraesCS1A02G009000
Populus -


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cDNA sequences
Sobic.009G002000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G277200 rRNA-processing protein FCF, putative, expressed K14773: U3 small nucleolar RNA-associated protein 23
2 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
3 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
4 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
5 Sobic.008G118500 tRNA synthetase, putative, expressed K01867: WARS, tryptophanyl-tRNA synthetase
6 Sobic.005G084900 OsDegp12 - Putative Deg protease homologue, expressed -
7 Sobic.009G102900 importin subunit beta, putative, expressed K14293: KPNB1, importin subunit beta-1
8 Sobic.001G157600 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
9 Sobic.009G258500 notchless protein, putative, expressed K14855: RSA4, ribosome assembly protein 4
10 Sobic.001G506000 N-acetylglucosaminyltransferase, putative, expressed -
11 Sobic.010G141600 erythronate-4-phosphate dehydrogenase domain containing protein, expressed K00122: formate dehydrogenase
12 Sobic.002G142700 PPR repeat containing protein, putative, expressed -
13 Sobic.003G132000 proteasome subunit, putative, expressed K12176: COPS2, CSN2, COP9 signalosome complex subunit 2
14 Sobic.004G282100 peptidase, putative, expressed K06013: STE24 endopeptidase
15 Sobic.002G208400 regulator protein, putative, expressed -
16 Sobic.009G258400 adhesion regulating molecule family, putative, expressed -
17 Sobic.004G010700 expressed protein -
18 Sobic.010G220900 thioredoxin, putative, expressed K03671: thioredoxin 1
19 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase
20 Sobic.008G013300 expressed protein -


Gene co-expression network
sample Sobic009G002000 Sobic009G002000 Sobic002G277200 Sobic002G277200 Sobic009G002000--Sobic002G277200 Sobic009G030400 Sobic009G030400 Sobic009G002000--Sobic009G030400 Sobic009G201800 Sobic009G201800 Sobic009G002000--Sobic009G201800 Sobic001G115500 Sobic001G115500 Sobic009G002000--Sobic001G115500 Sobic008G118500 Sobic008G118500 Sobic009G002000--Sobic008G118500 Sobic005G084900 Sobic005G084900 Sobic009G002000--Sobic005G084900 Sobic009G102900 Sobic009G102900 Sobic009G002000--Sobic009G102900 Sobic001G157600 Sobic001G157600 Sobic009G002000--Sobic001G157600 Sobic009G258500 Sobic009G258500 Sobic009G002000--Sobic009G258500 Sobic002G277200--Sobic009G002000 Sobic004G010700 Sobic004G010700 Sobic002G277200--Sobic004G010700 Sobic002G277200--Sobic009G258500 Sobic002G277200--Sobic009G201800 Sobic002G277200--Sobic001G157600 Sobic003G410400 Sobic003G410400 Sobic002G277200--Sobic003G410400 Sobic002G277200--Sobic009G102900 Sobic006G127500 Sobic006G127500 Sobic002G277200--Sobic006G127500 Sobic002G142700 Sobic002G142700 Sobic002G277200--Sobic002G142700 Sobic005G030100 Sobic005G030100 Sobic009G030400--Sobic005G030100 Sobic009G030400--Sobic009G002000 Sobic001G067000 Sobic001G067000 Sobic009G030400--Sobic001G067000 Sobic003G161800 Sobic003G161800 Sobic009G030400--Sobic003G161800 Sobic008G160500 Sobic008G160500 Sobic009G030400--Sobic008G160500 Sobic002G390400 Sobic002G390400 Sobic009G030400--Sobic002G390400 Sobic010G141600 Sobic010G141600 Sobic009G030400--Sobic010G141600 Sobic006G061100 Sobic006G061100 Sobic009G030400--Sobic006G061100 Sobic009G055600 Sobic009G055600 Sobic009G030400--Sobic009G055600 Sobic002G044000 Sobic002G044000 Sobic009G201800--Sobic002G044000 Sobic009G201800--Sobic004G010700 Sobic004G249300 Sobic004G249300 Sobic009G201800--Sobic004G249300 Sobic001G382200 Sobic001G382200 Sobic009G201800--Sobic001G382200 Sobic009G201800--Sobic009G258500 Sobic009G212300 Sobic009G212300 Sobic009G201800--Sobic009G212300 Sobic001G285300 Sobic001G285300 Sobic009G201800--Sobic001G285300 Sobic009G234400 Sobic009G234400 Sobic009G201800--Sobic009G234400 Sobic003G028100 Sobic003G028100 Sobic009G201800--Sobic003G028100 Sobic008G125000 Sobic008G125000 Sobic001G115500--Sobic008G125000 Sobic001G008500 Sobic001G008500 Sobic001G115500--Sobic001G008500 Sobic003G008600 Sobic003G008600 Sobic001G115500--Sobic003G008600 Sobic001G115500--Sobic004G249300 Sobic001G115500--Sobic009G102900 Sobic002G208400 Sobic002G208400 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G436300 Sobic001G436300 Sobic001G115500--Sobic001G436300 Sobic001G373000 Sobic001G373000 Sobic001G115500--Sobic001G373000 Sobic001G178400 Sobic001G178400 Sobic008G118500--Sobic001G178400 Sobic006G087100 Sobic006G087100 Sobic008G118500--Sobic006G087100 Sobic008G118500--Sobic009G102900 Sobic008G118500--Sobic009G002000 Sobic010G220900 Sobic010G220900 Sobic008G118500--Sobic010G220900 Sobic001G469200 Sobic001G469200 Sobic008G118500--Sobic001G469200 Sobic001G291800 Sobic001G291800 Sobic008G118500--Sobic001G291800 Sobic009G258400 Sobic009G258400 Sobic008G118500--Sobic009G258400 Sobic001G346300 Sobic001G346300 Sobic008G118500--Sobic001G346300 Sobic005G084900--Sobic009G002000 Sobic005G084900--Sobic009G030400 Sobic006G164000 Sobic006G164000 Sobic005G084900--Sobic006G164000 Sobic002G280900 Sobic002G280900 Sobic005G084900--Sobic002G280900 Sobic005G084900--Sobic001G067000 Sobic001G294600 Sobic001G294600 Sobic005G084900--Sobic001G294600 Sobic010G059700 Sobic010G059700 Sobic005G084900--Sobic010G059700 Sobic004G145600 Sobic004G145600 Sobic005G084900--Sobic004G145600 Sobic005G084900--Sobic010G141600 Sobic009G102900--Sobic001G115500 Sobic003G198300 Sobic003G198300 Sobic009G102900--Sobic003G198300 Sobic009G102900--Sobic001G178400 Sobic009G102900--Sobic004G249300 Sobic009G102900--Sobic008G118500 Sobic009G102900--Sobic009G002000 Sobic009G102900--Sobic001G008500 Sobic009G102900--Sobic001G346300 Sobic004G047200 Sobic004G047200 Sobic009G102900--Sobic004G047200 Sobic010G256200 Sobic010G256200 Sobic001G157600--Sobic010G256200 Sobic006G245700 Sobic006G245700 Sobic001G157600--Sobic006G245700 Sobic001G157600--Sobic006G127500 Sobic004G145300 Sobic004G145300 Sobic001G157600--Sobic004G145300 Sobic001G157600--Sobic001G436300 Sobic001G157600--Sobic001G115500 Sobic010G154000 Sobic010G154000 Sobic001G157600--Sobic010G154000 Sobic002G306600 Sobic002G306600 Sobic001G157600--Sobic002G306600 Sobic001G157600--Sobic009G002000 Sobic009G258500--Sobic001G382200 Sobic009G258500--Sobic004G010700 Sobic009G258500--Sobic009G201800 Sobic009G258500--Sobic003G198300 Sobic006G226500 Sobic006G226500 Sobic009G258500--Sobic006G226500 Sobic004G252000 Sobic004G252000 Sobic009G258500--Sobic004G252000 Sobic009G258500--Sobic004G047200 Sobic008G016100 Sobic008G016100 Sobic009G258500--Sobic008G016100 Sobic009G258500--Sobic004G249300
Octagon: transcription factors


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