Gene annotation
Transcriptome id Sobic.007G089800.1,Sobic.007G089800.2
Synonym Sb07g007800
Functional annotation SET domain containing protein, expressed
UniProt A0A1B6PGM5 , A0A1Z5R8Y1
Pfam PF09273 PF00856 PF00856
Panther DB PTHR13271 PTHR13271:SF37
NCBI CDD -
KEGG Orthology K19199; protein-histidine N-methyltransferase
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G18850 : SET domain-containing protein
RAP-DB (Rice) LOC_Os08g14660.1 : SET domain containing protein, expressed
MaizeGDB (Corn) Zm00025a054998
Brachypodium KQJ95776 , KQJ95774 , KQJ95775 , PNT66965 , PNT66964 , PNT66967 , PNT66966
Barley -
Wheat TraesCS3B02G508100 , TraesCS3D02G459000 , TraesCS3D02G459000 , TraesCS3A02G464400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
2 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
3 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
4 Sobic.004G315500 RFC5 - Putative clamp loader of PCNA, replication factor C subunit 5, expressed K10756: replication factor C subunit 3/5
5 Sobic.010G188000 elongation factor, putative, expressed K12852: 116 kDa U5 small nuclear ribonucleoprotein component
6 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -
7 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
8 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
9 Sobic.010G186600 expressed protein -
10 Sobic.002G005000 expressed protein K14557: U3 small nucleolar RNA-associated protein 6
11 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
12 Sobic.002G372500 exportin 1, putative, expressed K14288: exportin-T
13 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
14 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
15 Sobic.006G225400 zinc finger protein, putative, expressed -
16 Sobic.009G016400 RNA recognition motif containing protein, expressed -
17 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
18 Sobic.009G211200 tRNAHis guanylyltransferase family protein, expressed K10761: tRNA(His) guanylyltransferase
19 Sobic.006G125900 elongator complex protein 3, putative, expressed K07739: ELP3, elongator complex protein 3
20 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22


Gene co-expression network
sample Sobic007G089800 Sobic007G089800 Sobic001G373000 Sobic001G373000 Sobic007G089800--Sobic001G373000 Sobic006G002800 Sobic006G002800 Sobic007G089800--Sobic006G002800 Sobic001G408600 Sobic001G408600 Sobic007G089800--Sobic001G408600 Sobic004G315500 Sobic004G315500 Sobic007G089800--Sobic004G315500 Sobic010G188000 Sobic010G188000 Sobic007G089800--Sobic010G188000 Sobic001G461300 Sobic001G461300 Sobic007G089800--Sobic001G461300 Sobic006G193300 Sobic006G193300 Sobic007G089800--Sobic006G193300 Sobic010G205900 Sobic010G205900 Sobic007G089800--Sobic010G205900 Sobic010G186600 Sobic010G186600 Sobic007G089800--Sobic010G186600 Sobic009G104900 Sobic009G104900 Sobic001G373000--Sobic009G104900 Sobic004G038100 Sobic004G038100 Sobic001G373000--Sobic004G038100 Sobic002G005000 Sobic002G005000 Sobic001G373000--Sobic002G005000 Sobic003G259600 Sobic003G259600 Sobic001G373000--Sobic003G259600 Sobic003G361400 Sobic003G361400 Sobic001G373000--Sobic003G361400 Sobic001G373000--Sobic010G188000 Sobic002G126800 Sobic002G126800 Sobic001G373000--Sobic002G126800 Sobic001G013300 Sobic001G013300 Sobic001G373000--Sobic001G013300 Sobic005G028100 Sobic005G028100 Sobic001G373000--Sobic005G028100 Sobic003G308500 Sobic003G308500 Sobic006G002800--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic006G002800--Sobic004G224600 Sobic002G150700 Sobic002G150700 Sobic006G002800--Sobic002G150700 Sobic001G145400 Sobic001G145400 Sobic006G002800--Sobic001G145400 Sobic003G146600 Sobic003G146600 Sobic006G002800--Sobic003G146600 Sobic010G007100 Sobic010G007100 Sobic006G002800--Sobic010G007100 Sobic004G321700 Sobic004G321700 Sobic006G002800--Sobic004G321700 Sobic009G234700 Sobic009G234700 Sobic006G002800--Sobic009G234700 Sobic008G147200 Sobic008G147200 Sobic006G002800--Sobic008G147200 Sobic003G246000 Sobic003G246000 Sobic001G408600--Sobic003G246000 Sobic001G408600--Sobic001G373000 Sobic001G408600--Sobic001G461300 Sobic001G408600--Sobic007G089800 Sobic001G004100 Sobic001G004100 Sobic001G408600--Sobic001G004100 Sobic006G125900 Sobic006G125900 Sobic001G408600--Sobic006G125900 Sobic009G211200 Sobic009G211200 Sobic001G408600--Sobic009G211200 Sobic001G408600--Sobic006G002800 Sobic001G408600--Sobic001G145400 Sobic001G488100 Sobic001G488100 Sobic004G315500--Sobic001G488100 Sobic005G010900 Sobic005G010900 Sobic004G315500--Sobic005G010900 Sobic004G315500--Sobic001G373000 Sobic004G315500--Sobic010G188000 Sobic004G322300 Sobic004G322300 Sobic004G315500--Sobic004G322300 Sobic006G137700 Sobic006G137700 Sobic004G315500--Sobic006G137700 Sobic001G239800 Sobic001G239800 Sobic004G315500--Sobic001G239800 Sobic004G315500--Sobic007G089800 Sobic003G123100 Sobic003G123100 Sobic004G315500--Sobic003G123100 Sobic010G188000--Sobic001G373000 Sobic010G188000--Sobic004G038100 Sobic002G371600 Sobic002G371600 Sobic010G188000--Sobic002G371600 Sobic006G181800 Sobic006G181800 Sobic010G188000--Sobic006G181800 Sobic001G451300 Sobic001G451300 Sobic010G188000--Sobic001G451300 Sobic002G160700 Sobic002G160700 Sobic010G188000--Sobic002G160700 Sobic010G188000--Sobic004G315500 Sobic010G188000--Sobic005G010900 Sobic010G236600 Sobic010G236600 Sobic010G188000--Sobic010G236600 Sobic002G372500 Sobic002G372500 Sobic001G461300--Sobic002G372500 Sobic001G461300--Sobic006G193300 Sobic001G461300--Sobic001G408600 Sobic001G461300--Sobic006G002800 Sobic001G461300--Sobic009G234700 Sobic001G461300--Sobic002G371600 Sobic001G461300--Sobic007G089800 Sobic001G461300--Sobic001G373000 Sobic001G461300--Sobic004G224600 Sobic004G340400 Sobic004G340400 Sobic006G193300--Sobic004G340400 Sobic001G429600 Sobic001G429600 Sobic006G193300--Sobic001G429600 Sobic006G193300--Sobic001G461300 Sobic002G408900 Sobic002G408900 Sobic006G193300--Sobic002G408900 Sobic008G049100 Sobic008G049100 Sobic006G193300--Sobic008G049100 Sobic009G246500 Sobic009G246500 Sobic006G193300--Sobic009G246500 Sobic006G193300--Sobic006G125900 Sobic001G401500 Sobic001G401500 Sobic006G193300--Sobic001G401500 Sobic003G199300 Sobic003G199300 Sobic006G193300--Sobic003G199300 Sobic010G205900--Sobic008G049100 Sobic003G123200 Sobic003G123200 Sobic010G205900--Sobic003G123200 Sobic010G205900--Sobic009G246500 Sobic010G205900--Sobic005G028100 Sobic002G071400 Sobic002G071400 Sobic010G205900--Sobic002G071400 Sobic005G098800 Sobic005G098800 Sobic010G205900--Sobic005G098800 Sobic008G163500 Sobic008G163500 Sobic010G205900--Sobic008G163500 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic009G255600 Sobic009G255600 Sobic010G186600--Sobic009G255600 Sobic010G186600--Sobic008G147200 Sobic002G145800 Sobic002G145800 Sobic010G186600--Sobic002G145800 Sobic001G291800 Sobic001G291800 Sobic010G186600--Sobic001G291800 Sobic010G186600--Sobic002G005000 Sobic001G023800 Sobic001G023800 Sobic010G186600--Sobic001G023800 Sobic010G266500 Sobic010G266500 Sobic010G186600--Sobic010G266500 Sobic001G052400 Sobic001G052400 Sobic010G186600--Sobic001G052400 Sobic003G409200 Sobic003G409200 Sobic010G186600--Sobic003G409200
Octagon: transcription factors


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