Gene annotation
Transcriptome id Sobic.006G225400.1
Synonym SDG36, ATXR2, Sb06g029440
Functional annotation zinc finger protein, putative, expressed
UniProt A0A1B6PNC7
Pfam PF00856
Panther DB PTHR12197 PTHR12197:SF75
NCBI CDD KOG2084; Predicted histone tail methylase containing SET domain
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G21820 : histone-lysine N-methyltransferase ATXR2
RAP-DB (Rice) LOC_Os04g53700.1 : zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a009674
Brachypodium PNT61902
Barley -
Wheat TraesCS2D02G478700 , TraesCS2A02G479500 , TraesCS2B02G504000
Populus -


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cDNA sequences
Sobic.006G225400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
2 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
3 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
4 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
5 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
6 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
7 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
8 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
9 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
10 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
11 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase
12 Sobic.005G088900 AGAP007117-PA, putative, expressed -
13 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
14 Sobic.001G008500 metallo-beta-lactamase, putative, expressed K14403: CPSF3, cleavage and polyadenylation specificity factor subunit 3
15 Sobic.008G049100 nucleolar protein family 6, putative, expressed K14544: UTP22, U3 small nucleolar RNA-associated protein 22
16 Sobic.007G092200 aspartate carbamoyltransferase, putative, expressed K00609: pyrB, aspartate carbamoyltransferase catalytic subunit
17 Sobic.001G373000 nucleoporin interacting component, putative, expressed K14309: NUP93, nuclear pore complex protein Nup93
18 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
19 Sobic.001G457200 mitochondrial carrier protein, putative, expressed -
20 Sobic.002G126800 tetratricopeptide repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic006G225400 Sobic006G225400 Sobic005G028100 Sobic005G028100 Sobic006G225400--Sobic005G028100 Sobic006G251600 Sobic006G251600 Sobic006G225400--Sobic006G251600 Sobic004G036700 Sobic004G036700 Sobic006G225400--Sobic004G036700 Sobic003G425100 Sobic003G425100 Sobic006G225400--Sobic003G425100 Sobic009G071700 Sobic009G071700 Sobic006G225400--Sobic009G071700 Sobic010G205900 Sobic010G205900 Sobic006G225400--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic006G225400--Sobic003G123200 Sobic001G401400 Sobic001G401400 Sobic006G225400--Sobic001G401400 Sobic006G198600 Sobic006G198600 Sobic006G225400--Sobic006G198600 Sobic005G028100--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic005G028100--Sobic008G163500 Sobic005G028100--Sobic006G225400 Sobic005G028100--Sobic010G205900 Sobic005G028100--Sobic003G123200 Sobic003G432300 Sobic003G432300 Sobic005G028100--Sobic003G432300 Sobic002G126800 Sobic002G126800 Sobic005G028100--Sobic002G126800 Sobic001G373000 Sobic001G373000 Sobic005G028100--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic005G028100--Sobic002G132600 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G251600--Sobic006G198600 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic004G036700--Sobic005G028100 Sobic004G036700--Sobic001G401400 Sobic001G422500 Sobic001G422500 Sobic004G036700--Sobic001G422500 Sobic004G036700--Sobic006G225400 Sobic004G036700--Sobic008G163500 Sobic004G036700--Sobic003G123200 Sobic004G036700--Sobic003G425100 Sobic004G036700--Sobic006G198600 Sobic004G036700--Sobic010G205900 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic003G425100--Sobic005G028100 Sobic004G027300 Sobic004G027300 Sobic003G425100--Sobic004G027300 Sobic003G425100--Sobic006G225400 Sobic010G224700 Sobic010G224700 Sobic003G425100--Sobic010G224700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic003G425100--Sobic006G198600 Sobic003G425100--Sobic004G036700 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic009G071700--Sobic006G198600 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic009G071700--Sobic006G225400 Sobic005G100900 Sobic005G100900 Sobic009G071700--Sobic005G100900 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic008G049100 Sobic008G049100 Sobic010G205900--Sobic008G049100 Sobic010G205900--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic010G205900--Sobic009G246500 Sobic010G205900--Sobic005G028100 Sobic002G071400 Sobic002G071400 Sobic010G205900--Sobic002G071400 Sobic005G098800 Sobic005G098800 Sobic010G205900--Sobic005G098800 Sobic010G205900--Sobic008G163500 Sobic003G199300 Sobic003G199300 Sobic010G205900--Sobic003G199300 Sobic001G024000 Sobic001G024000 Sobic010G205900--Sobic001G024000 Sobic003G123200--Sobic005G098800 Sobic003G123200--Sobic008G163500 Sobic003G123200--Sobic010G205900 Sobic003G123200--Sobic009G246500 Sobic003G123200--Sobic008G049100 Sobic003G123200--Sobic005G028100 Sobic002G423400 Sobic002G423400 Sobic003G123200--Sobic002G423400 Sobic003G123200--Sobic006G198600 Sobic003G123200--Sobic010G224700 Sobic001G401400--Sobic004G036700 Sobic001G401400--Sobic006G198600 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic001G401400--Sobic006G225400 Sobic001G401400--Sobic001G422500 Sobic003G407600 Sobic003G407600 Sobic001G401400--Sobic003G407600 Sobic006G198600--Sobic003G123200 Sobic006G198600--Sobic009G071700 Sobic006G198600--Sobic001G401400 Sobic006G198600--Sobic008G163500 Sobic006G198600--Sobic006G251600 Sobic006G198600--Sobic008G049100 Sobic006G198600--Sobic003G425100 Sobic006G198600--Sobic004G036700 Sobic001G157300 Sobic001G157300 Sobic006G198600--Sobic001G157300
Octagon: transcription factors


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