Gene annotation
Transcriptome id Sobic.009G163600.1
Synonym Sb09g022550, RRP41
Functional annotation exosome complex exonuclease, putative, expressed
UniProt C5YZ99
Pfam PF03725 PF01138
Panther DB PTHR11953 PTHR11953:SF0
NCBI CDD KOG1068; Exosomal 3'-5' exoribonuclease complex, subunit Rrp41 and related exoribonucleases
KEGG Orthology K11600; RRP41, EXOSC4, exosome complex component RRP41
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G61620 : 3\'-5\'-exoribonuclease family protein
RAP-DB (Rice) LOC_Os09g07820.1 : exosome complex exonuclease, putative, expressed
MaizeGDB (Corn) Zm00025a036573
Brachypodium KQK04939 , KQK04940
Barley HORVU1Hr1G085870.1 , HORVU1Hr1G085870.3 , HORVU1Hr1G085870.2
Wheat TraesCS1D02G397700 , TraesCS1A02G389600 , TraesCS7B02G274700 , TraesCS2B02G120300 , TraesCS3A02G041300 , TraesCS4B02G104800
Populus PNT03888


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cDNA sequences
Sobic.009G163600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
2 Sobic.003G436600 expressed protein -
3 Sobic.002G112600 zinc finger family protein, putative, expressed -
4 Sobic.010G224700 - K17680: twinkle protein
5 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
7 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
8 Sobic.007G059700 CRS2-associated factor 2, mitochondrial precursor, putative, expressed -
9 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
10 Sobic.004G151000 RecF/RecN/SMC N terminal domain containing protein, expressed K10866: DNA repair protein RAD50
11 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
12 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
13 Sobic.004G027300 expressed protein -
14 Sobic.004G027400 - -
15 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
16 Sobic.004G215900 S1 RNA binding domain containing protein, expressed K00962: pnp, polyribonucleotide nucleotidyltransferase
17 Sobic.005G088900 AGAP007117-PA, putative, expressed -
18 Sobic.006G225400 zinc finger protein, putative, expressed -
19 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
20 Sobic.007G014800 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic009G163600 Sobic009G163600 Sobic003G425100 Sobic003G425100 Sobic009G163600--Sobic003G425100 Sobic003G436600 Sobic003G436600 Sobic009G163600--Sobic003G436600 Sobic002G112600 Sobic002G112600 Sobic009G163600--Sobic002G112600 Sobic010G224700 Sobic010G224700 Sobic009G163600--Sobic010G224700 Sobic001G322600 Sobic001G322600 Sobic009G163600--Sobic001G322600 Sobic008G163500 Sobic008G163500 Sobic009G163600--Sobic008G163500 Sobic004G038100 Sobic004G038100 Sobic009G163600--Sobic004G038100 Sobic007G059700 Sobic007G059700 Sobic009G163600--Sobic007G059700 Sobic006G140400 Sobic006G140400 Sobic009G163600--Sobic006G140400 Sobic003G425100--Sobic009G163600 Sobic005G028100 Sobic005G028100 Sobic003G425100--Sobic005G028100 Sobic004G027300 Sobic004G027300 Sobic003G425100--Sobic004G027300 Sobic006G225400 Sobic006G225400 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic009G071700 Sobic009G071700 Sobic003G425100--Sobic009G071700 Sobic003G425100--Sobic003G436600 Sobic006G198600 Sobic006G198600 Sobic003G425100--Sobic006G198600 Sobic004G036700 Sobic004G036700 Sobic003G425100--Sobic004G036700 Sobic003G436600--Sobic009G163600 Sobic003G436600--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic003G436600--Sobic002G177500 Sobic004G027400 Sobic004G027400 Sobic003G436600--Sobic004G027400 Sobic003G436600--Sobic007G059700 Sobic001G368300 Sobic001G368300 Sobic003G436600--Sobic001G368300 Sobic005G088900 Sobic005G088900 Sobic003G436600--Sobic005G088900 Sobic003G361400 Sobic003G361400 Sobic003G436600--Sobic003G361400 Sobic001G453500 Sobic001G453500 Sobic003G436600--Sobic001G453500 Sobic004G151000 Sobic004G151000 Sobic002G112600--Sobic004G151000 Sobic004G215900 Sobic004G215900 Sobic002G112600--Sobic004G215900 Sobic002G112600--Sobic010G224700 Sobic007G014800 Sobic007G014800 Sobic002G112600--Sobic007G014800 Sobic005G000300 Sobic005G000300 Sobic002G112600--Sobic005G000300 Sobic002G112600--Sobic004G027400 Sobic002G112600--Sobic009G163600 Sobic002G112600--Sobic001G453500 Sobic002G112600--Sobic004G027300 Sobic002G378100 Sobic002G378100 Sobic010G224700--Sobic002G378100 Sobic008G017100 Sobic008G017100 Sobic010G224700--Sobic008G017100 Sobic010G224700--Sobic004G027300 Sobic001G119600 Sobic001G119600 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic010G224700--Sobic008G163500 Sobic001G049800 Sobic001G049800 Sobic010G224700--Sobic001G049800 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic010G083900 Sobic010G083900 Sobic001G322600--Sobic010G083900 Sobic001G322600--Sobic009G163600 Sobic002G344500 Sobic002G344500 Sobic001G322600--Sobic002G344500 Sobic003G014700 Sobic003G014700 Sobic001G322600--Sobic003G014700 Sobic004G354000 Sobic004G354000 Sobic001G322600--Sobic004G354000 Sobic001G322600--Sobic010G224700 Sobic003G407600 Sobic003G407600 Sobic001G322600--Sobic003G407600 Sobic005G028300 Sobic005G028300 Sobic001G322600--Sobic005G028300 Sobic001G322600--Sobic002G378100 Sobic008G163500--Sobic005G028100 Sobic008G163500--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic008G163500--Sobic009G246500 Sobic010G205900 Sobic010G205900 Sobic008G163500--Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic008G163500--Sobic008G049100 Sobic005G098800 Sobic005G098800 Sobic008G163500--Sobic005G098800 Sobic001G422500 Sobic001G422500 Sobic008G163500--Sobic001G422500 Sobic008G163500--Sobic010G224700 Sobic008G163500--Sobic004G036700 Sobic006G033101 Sobic006G033101 Sobic004G038100--Sobic006G033101 Sobic006G181800 Sobic006G181800 Sobic004G038100--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic004G038100--Sobic001G373000 Sobic004G038100--Sobic004G215900 Sobic010G188000 Sobic010G188000 Sobic004G038100--Sobic010G188000 Sobic003G259600 Sobic003G259600 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic006G280100 Sobic006G280100 Sobic004G038100--Sobic006G280100 Sobic009G104900 Sobic009G104900 Sobic004G038100--Sobic009G104900 Sobic006G273900 Sobic006G273900 Sobic007G059700--Sobic006G273900 Sobic007G060600 Sobic007G060600 Sobic007G059700--Sobic007G060600 Sobic007G059700--Sobic004G151000 Sobic007G059700--Sobic001G049800 Sobic007G059700--Sobic004G027300 Sobic009G191500 Sobic009G191500 Sobic007G059700--Sobic009G191500 Sobic007G059700--Sobic001G453500 Sobic010G097500 Sobic010G097500 Sobic007G059700--Sobic010G097500 Sobic006G111200 Sobic006G111200 Sobic007G059700--Sobic006G111200 Sobic006G140400--Sobic001G453500 Sobic006G140400--Sobic010G224700 Sobic006G140400--Sobic002G112600 Sobic002G386900 Sobic002G386900 Sobic006G140400--Sobic002G386900 Sobic006G140400--Sobic004G215900 Sobic010G032300 Sobic010G032300 Sobic006G140400--Sobic010G032300 Sobic006G140400--Sobic004G027400 Sobic007G017200 Sobic007G017200 Sobic006G140400--Sobic007G017200 Sobic002G043000 Sobic002G043000 Sobic006G140400--Sobic002G043000
Octagon: transcription factors


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