Gene annotation
Transcriptome id Sobic.001G322600.1
Synonym Sb01g031290
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
expressed protein
UniProt C5WUM8
Pfam PF09243
Panther DB PTHR21320 PTHR21320:SF0
NCBI CDD KOG2539; Mitochondrial/chloroplast ribosome small subunit component
KEGG Orthology -
Gene Ontology GO:0008168; methyltransferase activity GO:0006412translation GO:0005507copper ion binding


Orthologs (automatic annotation)
TAIR AT1G64600 : methyltransferases;copper ion binding
RAP-DB (Rice) LOC_Os07g20150.1 : expressed protein
MaizeGDB (Corn) Zm00025a003065
Brachypodium KQJ97493 , PNT67737
Barley HORVU1Hr1G048400.5 , HORVU1Hr1G048400.4 , HORVU1Hr1G048400.3 , HORVU1Hr1G048400.2 , HORVU1Hr1G048400.1
Wheat TraesCS1A02G182900 , TraesCS1A02G182900 , TraesCS1D02G186400 , TraesCS1B02G197800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
2 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
3 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
4 Sobic.003G014700 pentatricopeptide, putative, expressed -
5 Sobic.004G354000 OsSigP1 - Putative Type I Signal Peptidase homologue@ employs a putative Ser/His catalytic dyad, expressed -
6 Sobic.010G224700 - K17680: twinkle protein
7 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
8 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
9 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
10 Sobic.008G098600 DNA-directed RNA polymerase III subunit RPC9, putative, expressed -
11 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
12 Sobic.002G423400 PPR repeat containing protein, expressed -
13 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
14 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
15 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
16 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
17 Sobic.002G191100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
18 Sobic.008G017100 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
19 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
20 Sobic.006G095800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G322600 Sobic001G322600 Sobic010G083900 Sobic010G083900 Sobic001G322600--Sobic010G083900 Sobic009G163600 Sobic009G163600 Sobic001G322600--Sobic009G163600 Sobic002G344500 Sobic002G344500 Sobic001G322600--Sobic002G344500 Sobic003G014700 Sobic003G014700 Sobic001G322600--Sobic003G014700 Sobic004G354000 Sobic004G354000 Sobic001G322600--Sobic004G354000 Sobic010G224700 Sobic010G224700 Sobic001G322600--Sobic010G224700 Sobic003G407600 Sobic003G407600 Sobic001G322600--Sobic003G407600 Sobic005G028300 Sobic005G028300 Sobic001G322600--Sobic005G028300 Sobic002G378100 Sobic002G378100 Sobic001G322600--Sobic002G378100 Sobic010G083900--Sobic002G378100 Sobic010G083900--Sobic001G322600 Sobic001G049800 Sobic001G049800 Sobic010G083900--Sobic001G049800 Sobic001G422500 Sobic001G422500 Sobic010G083900--Sobic001G422500 Sobic010G083900--Sobic010G224700 Sobic004G151000 Sobic004G151000 Sobic010G083900--Sobic004G151000 Sobic010G083900--Sobic003G014700 Sobic010G083900--Sobic005G028300 Sobic001G119600 Sobic001G119600 Sobic010G083900--Sobic001G119600 Sobic003G425100 Sobic003G425100 Sobic009G163600--Sobic003G425100 Sobic003G436600 Sobic003G436600 Sobic009G163600--Sobic003G436600 Sobic002G112600 Sobic002G112600 Sobic009G163600--Sobic002G112600 Sobic009G163600--Sobic010G224700 Sobic009G163600--Sobic001G322600 Sobic008G163500 Sobic008G163500 Sobic009G163600--Sobic008G163500 Sobic004G038100 Sobic004G038100 Sobic009G163600--Sobic004G038100 Sobic007G059700 Sobic007G059700 Sobic009G163600--Sobic007G059700 Sobic006G140400 Sobic006G140400 Sobic009G163600--Sobic006G140400 Sobic003G322200 Sobic003G322200 Sobic002G344500--Sobic003G322200 Sobic002G344500--Sobic001G322600 Sobic008G056900 Sobic008G056900 Sobic002G344500--Sobic008G056900 Sobic009G096100 Sobic009G096100 Sobic002G344500--Sobic009G096100 Sobic002G344500--Sobic003G407600 Sobic006G226300 Sobic006G226300 Sobic002G344500--Sobic006G226300 Sobic004G036700 Sobic004G036700 Sobic002G344500--Sobic004G036700 Sobic002G344500--Sobic001G422500 Sobic008G152300 Sobic008G152300 Sobic002G344500--Sobic008G152300 Sobic003G014700--Sobic002G378100 Sobic003G014700--Sobic005G028300 Sobic003G014700--Sobic010G083900 Sobic003G014700--Sobic001G322600 Sobic001G391101 Sobic001G391101 Sobic003G014700--Sobic001G391101 Sobic004G027500 Sobic004G027500 Sobic003G014700--Sobic004G027500 Sobic002G423400 Sobic002G423400 Sobic003G014700--Sobic002G423400 Sobic005G012700 Sobic005G012700 Sobic003G014700--Sobic005G012700 Sobic003G419800 Sobic003G419800 Sobic003G014700--Sobic003G419800 Sobic006G208400 Sobic006G208400 Sobic004G354000--Sobic006G208400 Sobic004G342300 Sobic004G342300 Sobic004G354000--Sobic004G342300 Sobic008G017100 Sobic008G017100 Sobic004G354000--Sobic008G017100 Sobic002G356600 Sobic002G356600 Sobic004G354000--Sobic002G356600 Sobic004G354000--Sobic001G322600 Sobic002G079100 Sobic002G079100 Sobic004G354000--Sobic002G079100 Sobic004G356200 Sobic004G356200 Sobic004G354000--Sobic004G356200 Sobic001G027100 Sobic001G027100 Sobic004G354000--Sobic001G027100 Sobic006G236000 Sobic006G236000 Sobic004G354000--Sobic006G236000 Sobic010G224700--Sobic002G378100 Sobic010G224700--Sobic008G017100 Sobic004G027300 Sobic004G027300 Sobic010G224700--Sobic004G027300 Sobic010G224700--Sobic001G119600 Sobic003G123200 Sobic003G123200 Sobic010G224700--Sobic003G123200 Sobic010G224700--Sobic008G163500 Sobic010G224700--Sobic001G049800 Sobic010G224700--Sobic003G425100 Sobic003G199300 Sobic003G199300 Sobic010G224700--Sobic003G199300 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic010G247400 Sobic010G247400 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic008G009600 Sobic008G009600 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic003G407600--Sobic001G322600 Sobic001G401400 Sobic001G401400 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic002G251800 Sobic002G251800 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic005G028300--Sobic003G014700 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic005G028300--Sobic010G083900 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic002G378100--Sobic004G151000 Sobic002G378100--Sobic010G224700 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic002G378100--Sobic004G027300 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200
Octagon: transcription factors


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