Gene annotation
Transcriptome id Sobic.003G014700.1
Synonym Sb03g001460
Functional annotation pentatricopeptide, putative, expressed
UniProt C5XKD9
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF47
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G33680 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g27650.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a028562
Brachypodium KQK04358
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G378100 DNA-directed RNA polymerase 1B, mitochondrial precursor, putative, expressed K10908: POLRMT, DNA-directed RNA polymerase, mitochondrial
2 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
3 Sobic.010G083900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsPOP12 - Putative Prolyl Oligopeptidase homologue, expressed -
4 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.001G391101 - -
6 Sobic.004G027500 ruvB-like, putative, expressed K04499: RUVBL1, RVB1, RuvB-like protein 1 (pontin 52)
7 Sobic.002G423400 PPR repeat containing protein, expressed -
8 Sobic.005G012700 expressed protein -
9 Sobic.003G419800 pentatricopeptide repeat protein PPR1106-17, putative, expressed -
10 Sobic.003G121200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
11 Sobic.010G224700 - K17680: twinkle protein
12 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
13 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
14 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
15 Sobic.002G429400 PPR repeat containing protein, expressed -
16 Sobic.009G213200 PPR repeat domain containing protein, putative, expressed -
17 Sobic.002G092050 - -
18 Sobic.006G095800 oxidoreductase, aldo/keto reductase family protein, putative, expressed -
19 Sobic.010G017900 NUC153 domain containing protein, expressed K14788: NOL10, ribosome biogenesis protein ENP2
20 Sobic.001G001200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic003G014700 Sobic003G014700 Sobic002G378100 Sobic002G378100 Sobic003G014700--Sobic002G378100 Sobic005G028300 Sobic005G028300 Sobic003G014700--Sobic005G028300 Sobic010G083900 Sobic010G083900 Sobic003G014700--Sobic010G083900 Sobic001G322600 Sobic001G322600 Sobic003G014700--Sobic001G322600 Sobic001G391101 Sobic001G391101 Sobic003G014700--Sobic001G391101 Sobic004G027500 Sobic004G027500 Sobic003G014700--Sobic004G027500 Sobic002G423400 Sobic002G423400 Sobic003G014700--Sobic002G423400 Sobic005G012700 Sobic005G012700 Sobic003G014700--Sobic005G012700 Sobic003G419800 Sobic003G419800 Sobic003G014700--Sobic003G419800 Sobic006G185200 Sobic006G185200 Sobic002G378100--Sobic006G185200 Sobic006G128400 Sobic006G128400 Sobic002G378100--Sobic006G128400 Sobic004G151000 Sobic004G151000 Sobic002G378100--Sobic004G151000 Sobic010G224700 Sobic010G224700 Sobic002G378100--Sobic010G224700 Sobic002G378100--Sobic010G083900 Sobic002G092050 Sobic002G092050 Sobic002G378100--Sobic002G092050 Sobic004G027300 Sobic004G027300 Sobic002G378100--Sobic004G027300 Sobic001G422500 Sobic001G422500 Sobic002G378100--Sobic001G422500 Sobic009G213200 Sobic009G213200 Sobic002G378100--Sobic009G213200 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic002G251800 Sobic002G251800 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic005G028300--Sobic003G014700 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic005G028300--Sobic010G083900 Sobic010G083900--Sobic002G378100 Sobic010G083900--Sobic001G322600 Sobic001G049800 Sobic001G049800 Sobic010G083900--Sobic001G049800 Sobic010G083900--Sobic001G422500 Sobic010G083900--Sobic010G224700 Sobic010G083900--Sobic004G151000 Sobic010G083900--Sobic003G014700 Sobic010G083900--Sobic005G028300 Sobic001G119600 Sobic001G119600 Sobic010G083900--Sobic001G119600 Sobic001G322600--Sobic010G083900 Sobic009G163600 Sobic009G163600 Sobic001G322600--Sobic009G163600 Sobic002G344500 Sobic002G344500 Sobic001G322600--Sobic002G344500 Sobic001G322600--Sobic003G014700 Sobic004G354000 Sobic004G354000 Sobic001G322600--Sobic004G354000 Sobic001G322600--Sobic010G224700 Sobic003G407600 Sobic003G407600 Sobic001G322600--Sobic003G407600 Sobic001G322600--Sobic005G028300 Sobic001G322600--Sobic002G378100 Sobic001G081300 Sobic001G081300 Sobic001G391101--Sobic001G081300 Sobic001G347100 Sobic001G347100 Sobic001G391101--Sobic001G347100 Sobic001G391101--Sobic003G051500 Sobic001G391101--Sobic005G028300 Sobic007G179600 Sobic007G179600 Sobic001G391101--Sobic007G179600 Sobic001G391101--Sobic003G419800 Sobic001G391101--Sobic003G014700 Sobic001G391101--Sobic001G001200 Sobic004G241000 Sobic004G241000 Sobic001G391101--Sobic004G241000 Sobic007G106700 Sobic007G106700 Sobic004G027500--Sobic007G106700 Sobic003G275600 Sobic003G275600 Sobic004G027500--Sobic003G275600 Sobic010G017900 Sobic010G017900 Sobic004G027500--Sobic010G017900 Sobic004G027500--Sobic002G378100 Sobic002G071400 Sobic002G071400 Sobic004G027500--Sobic002G071400 Sobic004G027500--Sobic003G014700 Sobic010G206300 Sobic010G206300 Sobic004G027500--Sobic010G206300 Sobic001G501400 Sobic001G501400 Sobic004G027500--Sobic001G501400 Sobic003G123200 Sobic003G123200 Sobic004G027500--Sobic003G123200 Sobic002G423400--Sobic003G123200 Sobic009G246500 Sobic009G246500 Sobic002G423400--Sobic009G246500 Sobic005G098800 Sobic005G098800 Sobic002G423400--Sobic005G098800 Sobic002G423400--Sobic010G224700 Sobic010G205900 Sobic010G205900 Sobic002G423400--Sobic010G205900 Sobic008G049100 Sobic008G049100 Sobic002G423400--Sobic008G049100 Sobic007G201700 Sobic007G201700 Sobic002G423400--Sobic007G201700 Sobic006G208400 Sobic006G208400 Sobic002G423400--Sobic006G208400 Sobic002G423400--Sobic001G119600 Sobic002G234700 Sobic002G234700 Sobic005G012700--Sobic002G234700 Sobic002G373950 Sobic002G373950 Sobic005G012700--Sobic002G373950 Sobic005G012700--Sobic003G014700 Sobic005G012700--Sobic009G213200 Sobic001G224200 Sobic001G224200 Sobic005G012700--Sobic001G224200 Sobic009G103600 Sobic009G103600 Sobic005G012700--Sobic009G103600 Sobic008G165900 Sobic008G165900 Sobic005G012700--Sobic008G165900 Sobic009G214200 Sobic009G214200 Sobic005G012700--Sobic009G214200 Sobic005G012700--Sobic006G128400 Sobic003G419800--Sobic005G028300 Sobic003G419800--Sobic001G001200 Sobic003G419800--Sobic007G179600 Sobic003G419800--Sobic001G081300 Sobic003G419800--Sobic003G051500 Sobic003G419800--Sobic001G391101 Sobic001G390900 Sobic001G390900 Sobic003G419800--Sobic001G390900 Sobic003G419800--Sobic003G014700 Sobic007G182600 Sobic007G182600 Sobic003G419800--Sobic007G182600
Octagon: transcription factors


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