Gene annotation
Transcriptome id Sobic.002G429400.2
Synonym
Functional annotation PPR repeat containing protein, expressed
UniProt A0A1W0W896
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF789
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G09900 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os02g21580.1 : PPR repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a015514
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G289400 mitochondrial carrier protein, putative, expressed -
2 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
3 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
4 Sobic.001G413800 expressed protein K13141: integrator complex subunit 4
5 Sobic.003G014700 pentatricopeptide, putative, expressed -
6 Sobic.008G098600 DNA-directed RNA polymerase III subunit RPC9, putative, expressed -
7 Sobic.005G028300 Rf1, mitochondrial precursor, putative, expressed -
8 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
9 Sobic.001G122200 zinc finger protein, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
10 Sobic.007G187900 OsFBX187 - F-box domain containing protein, expressed -
11 Sobic.007G112000 - -
12 Sobic.004G224600 expressed protein -
13 Sobic.009G134400 pentatricopeptide repeat protein PPR986-12, putative, expressed -
14 Sobic.001G335900 vacuolar protein sorting-associated protein 52, putative, expressed -
15 Sobic.005G137700 OsFBX409 - F-box domain containing protein, expressed -
16 Sobic.005G059400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized PPR-repeat protein, putative, expressed -
17 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
18 Sobic.005G000300 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
19 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
20 Sobic.001G460500 T-complex protein, putative, expressed K09495: CCT3, T-complex protein 1 subunit gamma


Gene co-expression network
sample Sobic002G429400 Sobic002G429400 Sobic004G289400 Sobic004G289400 Sobic002G429400--Sobic004G289400 Sobic006G180700 Sobic006G180700 Sobic002G429400--Sobic006G180700 Sobic003G006400 Sobic003G006400 Sobic002G429400--Sobic003G006400 Sobic001G413800 Sobic001G413800 Sobic002G429400--Sobic001G413800 Sobic003G014700 Sobic003G014700 Sobic002G429400--Sobic003G014700 Sobic008G098600 Sobic008G098600 Sobic002G429400--Sobic008G098600 Sobic005G028300 Sobic005G028300 Sobic002G429400--Sobic005G028300 Sobic001G334100 Sobic001G334100 Sobic002G429400--Sobic001G334100 Sobic001G122200 Sobic001G122200 Sobic002G429400--Sobic001G122200 Sobic004G289400--Sobic002G429400 Sobic003G039500 Sobic003G039500 Sobic004G289400--Sobic003G039500 Sobic004G289400--Sobic001G413800 Sobic001G460500 Sobic001G460500 Sobic004G289400--Sobic001G460500 Sobic003G259600 Sobic003G259600 Sobic004G289400--Sobic003G259600 Sobic004G357400 Sobic004G357400 Sobic004G289400--Sobic004G357400 Sobic009G134900 Sobic009G134900 Sobic004G289400--Sobic009G134900 Sobic008G040700 Sobic008G040700 Sobic004G289400--Sobic008G040700 Sobic004G180500 Sobic004G180500 Sobic004G289400--Sobic004G180500 Sobic009G074700 Sobic009G074700 Sobic006G180700--Sobic009G074700 Sobic001G085700 Sobic001G085700 Sobic006G180700--Sobic001G085700 Sobic006G138000 Sobic006G138000 Sobic006G180700--Sobic006G138000 Sobic009G040800 Sobic009G040800 Sobic006G180700--Sobic009G040800 Sobic009G000400 Sobic009G000400 Sobic006G180700--Sobic009G000400 Sobic001G335900 Sobic001G335900 Sobic006G180700--Sobic001G335900 Sobic009G045200 Sobic009G045200 Sobic006G180700--Sobic009G045200 Sobic006G091000 Sobic006G091000 Sobic006G180700--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic006G180700--Sobic005G040900 Sobic006G208500 Sobic006G208500 Sobic003G006400--Sobic006G208500 Sobic006G200700 Sobic006G200700 Sobic003G006400--Sobic006G200700 Sobic002G275600 Sobic002G275600 Sobic003G006400--Sobic002G275600 Sobic001G369000 Sobic001G369000 Sobic003G006400--Sobic001G369000 Sobic003G006400--Sobic006G138000 Sobic010G151900 Sobic010G151900 Sobic003G006400--Sobic010G151900 Sobic001G145400 Sobic001G145400 Sobic003G006400--Sobic001G145400 Sobic006G077200 Sobic006G077200 Sobic003G006400--Sobic006G077200 Sobic010G007100 Sobic010G007100 Sobic003G006400--Sobic010G007100 Sobic001G477700 Sobic001G477700 Sobic001G413800--Sobic001G477700 Sobic001G413800--Sobic006G180700 Sobic001G034500 Sobic001G034500 Sobic001G413800--Sobic001G034500 Sobic006G154100 Sobic006G154100 Sobic001G413800--Sobic006G154100 Sobic006G281700 Sobic006G281700 Sobic001G413800--Sobic006G281700 Sobic007G042900 Sobic007G042900 Sobic001G413800--Sobic007G042900 Sobic010G204400 Sobic010G204400 Sobic001G413800--Sobic010G204400 Sobic004G068500 Sobic004G068500 Sobic001G413800--Sobic004G068500 Sobic002G363000 Sobic002G363000 Sobic001G413800--Sobic002G363000 Sobic002G378100 Sobic002G378100 Sobic003G014700--Sobic002G378100 Sobic003G014700--Sobic005G028300 Sobic010G083900 Sobic010G083900 Sobic003G014700--Sobic010G083900 Sobic001G322600 Sobic001G322600 Sobic003G014700--Sobic001G322600 Sobic001G391101 Sobic001G391101 Sobic003G014700--Sobic001G391101 Sobic004G027500 Sobic004G027500 Sobic003G014700--Sobic004G027500 Sobic002G423400 Sobic002G423400 Sobic003G014700--Sobic002G423400 Sobic005G012700 Sobic005G012700 Sobic003G014700--Sobic005G012700 Sobic003G419800 Sobic003G419800 Sobic003G014700--Sobic003G419800 Sobic008G098600--Sobic010G007100 Sobic003G214300 Sobic003G214300 Sobic008G098600--Sobic003G214300 Sobic003G382500 Sobic003G382500 Sobic008G098600--Sobic003G382500 Sobic009G046700 Sobic009G046700 Sobic008G098600--Sobic009G046700 Sobic008G098600--Sobic003G006400 Sobic006G142400 Sobic006G142400 Sobic008G098600--Sobic006G142400 Sobic009G251200 Sobic009G251200 Sobic008G098600--Sobic009G251200 Sobic010G264000 Sobic010G264000 Sobic008G098600--Sobic010G264000 Sobic008G098600--Sobic001G322600 Sobic002G389200 Sobic002G389200 Sobic005G028300--Sobic002G389200 Sobic003G051500 Sobic003G051500 Sobic005G028300--Sobic003G051500 Sobic002G251800 Sobic002G251800 Sobic005G028300--Sobic002G251800 Sobic001G001200 Sobic001G001200 Sobic005G028300--Sobic001G001200 Sobic005G028300--Sobic003G419800 Sobic005G028300--Sobic003G014700 Sobic005G028300--Sobic001G391101 Sobic002G084400 Sobic002G084400 Sobic005G028300--Sobic002G084400 Sobic005G028300--Sobic010G083900 Sobic007G143500 Sobic007G143500 Sobic001G334100--Sobic007G143500 Sobic003G184400 Sobic003G184400 Sobic001G334100--Sobic003G184400 Sobic005G199200 Sobic005G199200 Sobic001G334100--Sobic005G199200 Sobic001G334100--Sobic003G259600 Sobic005G059400 Sobic005G059400 Sobic001G334100--Sobic005G059400 Sobic002G142600 Sobic002G142600 Sobic001G334100--Sobic002G142600 Sobic001G334100--Sobic006G180700 Sobic004G067400 Sobic004G067400 Sobic001G334100--Sobic004G067400 Sobic005G000300 Sobic005G000300 Sobic001G334100--Sobic005G000300 Sobic008G163400 Sobic008G163400 Sobic001G122200--Sobic008G163400 Sobic010G068900 Sobic010G068900 Sobic001G122200--Sobic010G068900 Sobic004G282500 Sobic004G282500 Sobic001G122200--Sobic004G282500 Sobic004G241000 Sobic004G241000 Sobic001G122200--Sobic004G241000 Sobic006G262800 Sobic006G262800 Sobic001G122200--Sobic006G262800 Sobic001G268300 Sobic001G268300 Sobic001G122200--Sobic001G268300 Sobic001G396800 Sobic001G396800 Sobic001G122200--Sobic001G396800 Sobic006G069100 Sobic006G069100 Sobic001G122200--Sobic006G069100 Sobic001G149100 Sobic001G149100 Sobic001G122200--Sobic001G149100
Octagon: transcription factors


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