Gene annotation
Transcriptome id Sobic.005G059400.2
Synonym Sb05g004830
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
uncharacterized PPR-repeat protein, putative, expressed
UniProt A0A1B6PQE6
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF489
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46680 : Pentatricopeptide repeat (PPR-like) superfamily protein
RAP-DB (Rice) LOC_Os02g55020.1 : uncharacterized PPR-repeat protein, putative, expressed
MaizeGDB (Corn) Zm00025a033991
Brachypodium KQJ91272 , PNT65042 , PNT65041
Barley HORVU4Hr1G019280.8 , HORVU4Hr1G019280.9 , HORVU4Hr1G019280.2 , HORVU4Hr1G019280.3 , HORVU4Hr1G019280.1 , HORVU4Hr1G019280.6 , HORVU4Hr1G019280.7 , HORVU4Hr1G019280.4 , HORVU4Hr1G019280.5 , HORVU4Hr1G019280.18 , HORVU4Hr1G019280.19 , HORVU4Hr1G019280.10 , HORVU4Hr1G019280.11 , HORVU4Hr1G019280.12 , HORVU4Hr1G019280.13 , HORVU4Hr1G019280.14 , HORVU4Hr1G019280.15 , HORVU4Hr1G019280.16 , HORVU4Hr1G019280.17 , HORVU4Hr1G019280.20
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
2 Sobic.003G259600 ORC4 - Putative origin recognition complex subunit 4, expressed K02606: origin recognition complex subunit 4
3 Sobic.002G218700 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
4 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
5 Sobic.006G180700 SNF2 family N-terminal domain containing protein, expressed K14439: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1
6 Sobic.005G199200 nuclear pore protein 84/107 containing protein, expressed K14301: NUP107, nuclear pore complex protein Nup107
7 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
8 Sobic.002G132600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- K14314: NUP210, nuclear pore complex protein Nup210
9 Sobic.003G184400 jmjC domain-containing protein 4, putative, expressed -
10 Sobic.002G183300 GTP binding protein, putative, expressed -
11 Sobic.001G393700 expressed protein -
12 Sobic.009G126000 mannosylglycoprotein endo-beta-mannosidase, putative, expressed K18577: mannosylglycoprotein endo-beta-mannosidase
13 Sobic.002G240900 pentatricopeptide, putative, expressed -
14 Sobic.002G408600 expressed protein -
15 Sobic.006G069100 pentatricopeptide, putative, expressed -
16 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.001G226000 WD domain, G-beta repeat domain containing protein, expressed K10599: PRPF19, pre-mRNA-processing factor 19
18 Sobic.001G149100 vegetative storage protein, putative, expressed -
19 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
20 Sobic.006G109400 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic005G059400 Sobic005G059400 Sobic001G334100 Sobic001G334100 Sobic005G059400--Sobic001G334100 Sobic003G259600 Sobic003G259600 Sobic005G059400--Sobic003G259600 Sobic002G218700 Sobic002G218700 Sobic005G059400--Sobic002G218700 Sobic001G347100 Sobic001G347100 Sobic005G059400--Sobic001G347100 Sobic006G180700 Sobic006G180700 Sobic005G059400--Sobic006G180700 Sobic005G199200 Sobic005G199200 Sobic005G059400--Sobic005G199200 Sobic004G036700 Sobic004G036700 Sobic005G059400--Sobic004G036700 Sobic002G132600 Sobic002G132600 Sobic005G059400--Sobic002G132600 Sobic003G184400 Sobic003G184400 Sobic005G059400--Sobic003G184400 Sobic007G143500 Sobic007G143500 Sobic001G334100--Sobic007G143500 Sobic001G334100--Sobic003G184400 Sobic001G334100--Sobic005G199200 Sobic001G334100--Sobic003G259600 Sobic001G334100--Sobic005G059400 Sobic002G142600 Sobic002G142600 Sobic001G334100--Sobic002G142600 Sobic001G334100--Sobic006G180700 Sobic004G067400 Sobic004G067400 Sobic001G334100--Sobic004G067400 Sobic005G000300 Sobic005G000300 Sobic001G334100--Sobic005G000300 Sobic003G361400 Sobic003G361400 Sobic003G259600--Sobic003G361400 Sobic003G360300 Sobic003G360300 Sobic003G259600--Sobic003G360300 Sobic001G373000 Sobic001G373000 Sobic003G259600--Sobic001G373000 Sobic003G331000 Sobic003G331000 Sobic003G259600--Sobic003G331000 Sobic004G038100 Sobic004G038100 Sobic003G259600--Sobic004G038100 Sobic010G269300 Sobic010G269300 Sobic003G259600--Sobic010G269300 Sobic003G028400 Sobic003G028400 Sobic003G259600--Sobic003G028400 Sobic002G142700 Sobic002G142700 Sobic003G259600--Sobic002G142700 Sobic003G259600--Sobic001G334100 Sobic003G347300 Sobic003G347300 Sobic002G218700--Sobic003G347300 Sobic010G046400 Sobic010G046400 Sobic002G218700--Sobic010G046400 Sobic001G247200 Sobic001G247200 Sobic002G218700--Sobic001G247200 Sobic009G030300 Sobic009G030300 Sobic002G218700--Sobic009G030300 Sobic010G256000 Sobic010G256000 Sobic002G218700--Sobic010G256000 Sobic003G131200 Sobic003G131200 Sobic002G218700--Sobic003G131200 Sobic004G227500 Sobic004G227500 Sobic002G218700--Sobic004G227500 Sobic009G253400 Sobic009G253400 Sobic002G218700--Sobic009G253400 Sobic004G225700 Sobic004G225700 Sobic002G218700--Sobic004G225700 Sobic001G149100 Sobic001G149100 Sobic001G347100--Sobic001G149100 Sobic001G391101 Sobic001G391101 Sobic001G347100--Sobic001G391101 Sobic001G081300 Sobic001G081300 Sobic001G347100--Sobic001G081300 Sobic009G238700 Sobic009G238700 Sobic001G347100--Sobic009G238700 Sobic007G179600 Sobic007G179600 Sobic001G347100--Sobic007G179600 Sobic003G299200 Sobic003G299200 Sobic001G347100--Sobic003G299200 Sobic004G241000 Sobic004G241000 Sobic001G347100--Sobic004G241000 Sobic006G069100 Sobic006G069100 Sobic001G347100--Sobic006G069100 Sobic009G155400 Sobic009G155400 Sobic001G347100--Sobic009G155400 Sobic009G074700 Sobic009G074700 Sobic006G180700--Sobic009G074700 Sobic001G085700 Sobic001G085700 Sobic006G180700--Sobic001G085700 Sobic006G138000 Sobic006G138000 Sobic006G180700--Sobic006G138000 Sobic009G040800 Sobic009G040800 Sobic006G180700--Sobic009G040800 Sobic009G000400 Sobic009G000400 Sobic006G180700--Sobic009G000400 Sobic001G335900 Sobic001G335900 Sobic006G180700--Sobic001G335900 Sobic009G045200 Sobic009G045200 Sobic006G180700--Sobic009G045200 Sobic006G091000 Sobic006G091000 Sobic006G180700--Sobic006G091000 Sobic005G040900 Sobic005G040900 Sobic006G180700--Sobic005G040900 Sobic001G090300 Sobic001G090300 Sobic005G199200--Sobic001G090300 Sobic005G199200--Sobic003G184400 Sobic004G128200 Sobic004G128200 Sobic005G199200--Sobic004G128200 Sobic005G199200--Sobic001G334100 Sobic009G104900 Sobic009G104900 Sobic005G199200--Sobic009G104900 Sobic005G199200--Sobic001G373000 Sobic010G278600 Sobic010G278600 Sobic005G199200--Sobic010G278600 Sobic005G199200--Sobic002G142600 Sobic003G246000 Sobic003G246000 Sobic005G199200--Sobic003G246000 Sobic005G028100 Sobic005G028100 Sobic004G036700--Sobic005G028100 Sobic001G401400 Sobic001G401400 Sobic004G036700--Sobic001G401400 Sobic001G422500 Sobic001G422500 Sobic004G036700--Sobic001G422500 Sobic006G225400 Sobic006G225400 Sobic004G036700--Sobic006G225400 Sobic008G163500 Sobic008G163500 Sobic004G036700--Sobic008G163500 Sobic003G123200 Sobic003G123200 Sobic004G036700--Sobic003G123200 Sobic003G425100 Sobic003G425100 Sobic004G036700--Sobic003G425100 Sobic006G198600 Sobic006G198600 Sobic004G036700--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic004G036700--Sobic010G205900 Sobic002G132600--Sobic009G104900 Sobic003G432300 Sobic003G432300 Sobic002G132600--Sobic003G432300 Sobic002G132600--Sobic005G028100 Sobic002G132600--Sobic001G373000 Sobic002G126800 Sobic002G126800 Sobic002G132600--Sobic002G126800 Sobic002G132600--Sobic004G038100 Sobic006G059500 Sobic006G059500 Sobic002G132600--Sobic006G059500 Sobic002G254800 Sobic002G254800 Sobic002G132600--Sobic002G254800 Sobic010G250800 Sobic010G250800 Sobic002G132600--Sobic010G250800 Sobic003G184400--Sobic005G199200 Sobic003G184400--Sobic001G334100 Sobic003G184400--Sobic002G142600 Sobic003G184400--Sobic009G074700 Sobic003G184400--Sobic004G036700 Sobic003G184400--Sobic001G090300 Sobic002G005000 Sobic002G005000 Sobic003G184400--Sobic002G005000 Sobic005G137700 Sobic005G137700 Sobic003G184400--Sobic005G137700 Sobic002G408600 Sobic002G408600 Sobic003G184400--Sobic002G408600
Octagon: transcription factors


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