Gene annotation
Transcriptome id Sobic.002G183300.1
Synonym Sb02g023120
Functional annotation GTP binding protein, putative, expressed
UniProt C5XB97
Pfam PF01926
Panther DB PTHR11089 PTHR11089:SF38
NCBI CDD KOG1249; Predicted GTPases
KEGG Orthology -
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT4G10620 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os09g19980.1 : GTP binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a046698
Brachypodium KQJ90005
Barley HORVU5Hr1G057760.5 , HORVU5Hr1G057760.3 , HORVU5Hr1G057760.1 , HORVU5Hr1G057760.2 , HORVU5Hr1G057760.4
Wheat TraesCS5A02G191500 , TraesCS5D02G199400 , TraesCS5D02G199400 , TraesCS5B02G191600 , TraesCS5B02G191600
Populus -


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cDNA sequences
Sobic.002G183300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
2 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
3 Sobic.005G059400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@uncharacterized PPR-repeat protein, putative, expressed -
4 Sobic.001G105600 OsFBDUF60 - F-box and DUF domain containing protein, expressed -
5 Sobic.009G253400 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
6 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
7 Sobic.001G122200 zinc finger protein, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
8 Sobic.001G204700 expressed protein -
9 Sobic.008G000600 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1
10 Sobic.006G069100 pentatricopeptide, putative, expressed -
11 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
12 Sobic.004G227100 survival motor neuron containing protein, expressed K13130: GEMIN2, gem associated protein 2
13 Sobic.009G116400 pentatricopeptide, putative, expressed -
14 Sobic.010G256000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.010G092801 - -
16 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
17 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
18 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.005G210700 pentatricopeptide repeat domain containing protein, putative, expressed -
20 Sobic.006G271900 DNA mismatch repair protein MSH3, putative, expressed K08736: DNA mismatch repair protein MSH3


Gene co-expression network
sample Sobic002G183300 Sobic002G183300 Sobic004G025100 Sobic004G025100 Sobic002G183300--Sobic004G025100 Sobic001G401400 Sobic001G401400 Sobic002G183300--Sobic001G401400 Sobic005G059400 Sobic005G059400 Sobic002G183300--Sobic005G059400 Sobic001G105600 Sobic001G105600 Sobic002G183300--Sobic001G105600 Sobic009G253400 Sobic009G253400 Sobic002G183300--Sobic009G253400 Sobic001G334100 Sobic001G334100 Sobic002G183300--Sobic001G334100 Sobic001G122200 Sobic001G122200 Sobic002G183300--Sobic001G122200 Sobic001G204700 Sobic001G204700 Sobic002G183300--Sobic001G204700 Sobic008G000600 Sobic008G000600 Sobic002G183300--Sobic008G000600 Sobic006G069100 Sobic006G069100 Sobic004G025100--Sobic006G069100 Sobic010G256000 Sobic010G256000 Sobic004G025100--Sobic010G256000 Sobic009G155400 Sobic009G155400 Sobic004G025100--Sobic009G155400 Sobic004G025100--Sobic002G183300 Sobic002G084400 Sobic002G084400 Sobic004G025100--Sobic002G084400 Sobic005G028300 Sobic005G028300 Sobic004G025100--Sobic005G028300 Sobic005G210700 Sobic005G210700 Sobic004G025100--Sobic005G210700 Sobic009G116400 Sobic009G116400 Sobic004G025100--Sobic009G116400 Sobic006G085900 Sobic006G085900 Sobic004G025100--Sobic006G085900 Sobic004G036700 Sobic004G036700 Sobic001G401400--Sobic004G036700 Sobic006G198600 Sobic006G198600 Sobic001G401400--Sobic006G198600 Sobic005G028100 Sobic005G028100 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic006G225400 Sobic006G225400 Sobic001G401400--Sobic006G225400 Sobic001G422500 Sobic001G422500 Sobic001G401400--Sobic001G422500 Sobic003G407600 Sobic003G407600 Sobic001G401400--Sobic003G407600 Sobic005G059400--Sobic001G334100 Sobic003G259600 Sobic003G259600 Sobic005G059400--Sobic003G259600 Sobic002G218700 Sobic002G218700 Sobic005G059400--Sobic002G218700 Sobic001G347100 Sobic001G347100 Sobic005G059400--Sobic001G347100 Sobic006G180700 Sobic006G180700 Sobic005G059400--Sobic006G180700 Sobic005G199200 Sobic005G199200 Sobic005G059400--Sobic005G199200 Sobic005G059400--Sobic004G036700 Sobic002G132600 Sobic002G132600 Sobic005G059400--Sobic002G132600 Sobic003G184400 Sobic003G184400 Sobic005G059400--Sobic003G184400 Sobic008G099900 Sobic008G099900 Sobic001G105600--Sobic008G099900 Sobic001G105600--Sobic002G183300 Sobic006G271900 Sobic006G271900 Sobic001G105600--Sobic006G271900 Sobic010G092801 Sobic010G092801 Sobic001G105600--Sobic010G092801 Sobic004G227100 Sobic004G227100 Sobic001G105600--Sobic004G227100 Sobic006G109400 Sobic006G109400 Sobic001G105600--Sobic006G109400 Sobic001G105600--Sobic004G025100 Sobic001G105600--Sobic005G210700 Sobic006G193500 Sobic006G193500 Sobic001G105600--Sobic006G193500 Sobic009G253400--Sobic002G218700 Sobic010G170900 Sobic010G170900 Sobic009G253400--Sobic010G170900 Sobic001G261585 Sobic001G261585 Sobic009G253400--Sobic001G261585 Sobic008G007000 Sobic008G007000 Sobic009G253400--Sobic008G007000 Sobic009G253400--Sobic002G183300 Sobic009G055400 Sobic009G055400 Sobic009G253400--Sobic009G055400 Sobic003G347300 Sobic003G347300 Sobic009G253400--Sobic003G347300 Sobic001G372900 Sobic001G372900 Sobic009G253400--Sobic001G372900 Sobic009G253400--Sobic002G132600 Sobic007G143500 Sobic007G143500 Sobic001G334100--Sobic007G143500 Sobic001G334100--Sobic003G184400 Sobic001G334100--Sobic005G199200 Sobic001G334100--Sobic003G259600 Sobic001G334100--Sobic005G059400 Sobic002G142600 Sobic002G142600 Sobic001G334100--Sobic002G142600 Sobic001G334100--Sobic006G180700 Sobic004G067400 Sobic004G067400 Sobic001G334100--Sobic004G067400 Sobic005G000300 Sobic005G000300 Sobic001G334100--Sobic005G000300 Sobic008G163400 Sobic008G163400 Sobic001G122200--Sobic008G163400 Sobic010G068900 Sobic010G068900 Sobic001G122200--Sobic010G068900 Sobic004G282500 Sobic004G282500 Sobic001G122200--Sobic004G282500 Sobic004G241000 Sobic004G241000 Sobic001G122200--Sobic004G241000 Sobic006G262800 Sobic006G262800 Sobic001G122200--Sobic006G262800 Sobic001G268300 Sobic001G268300 Sobic001G122200--Sobic001G268300 Sobic001G396800 Sobic001G396800 Sobic001G122200--Sobic001G396800 Sobic001G122200--Sobic006G069100 Sobic001G149100 Sobic001G149100 Sobic001G122200--Sobic001G149100 Sobic003G397100 Sobic003G397100 Sobic001G204700--Sobic003G397100 Sobic001G204700--Sobic004G282500 Sobic004G043600 Sobic004G043600 Sobic001G204700--Sobic004G043600 Sobic001G204700--Sobic002G183300 Sobic001G204700--Sobic001G122200 Sobic003G205100 Sobic003G205100 Sobic001G204700--Sobic003G205100 Sobic001G033600 Sobic001G033600 Sobic001G204700--Sobic001G033600 Sobic001G204700--Sobic008G163400 Sobic001G204700--Sobic001G268300 Sobic003G432300 Sobic003G432300 Sobic008G000600--Sobic003G432300 Sobic008G000600--Sobic001G334100 Sobic002G182000 Sobic002G182000 Sobic008G000600--Sobic002G182000 Sobic008G000600--Sobic003G259600 Sobic008G000600--Sobic006G069100 Sobic010G099800 Sobic010G099800 Sobic008G000600--Sobic010G099800 Sobic002G126800 Sobic002G126800 Sobic008G000600--Sobic002G126800 Sobic003G235700 Sobic003G235700 Sobic008G000600--Sobic003G235700 Sobic002G399900 Sobic002G399900 Sobic008G000600--Sobic002G399900
Octagon: transcription factors


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