Gene annotation
Transcriptome id Sobic.001G372800.2,Sobic.001G372800.1
Synonym Sb01g035410
Functional annotation nucleolar protein NOP5-1, putative, expressed
UniProt A0A1B6QN92
Pfam PF01798 PF08156
Panther DB PTHR10894
NCBI CDD -
KEGG Orthology K14565; nucleolar protein 58
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05060 : NOP56-like pre RNA processing ribonucleoprotein
RAP-DB (Rice) LOC_Os03g22730.1 : nucleolar protein NOP5-1, putative, expressed
MaizeGDB (Corn) Zm00025a015761 , Zm00025a052382 , Zm00025a002456
Brachypodium KQK21686 , KQK14761
Barley HORVU4Hr1G041810.8 , HORVU4Hr1G041810.9 , HORVU4Hr1G041810.6 , HORVU4Hr1G041810.7 , HORVU4Hr1G041810.4 , HORVU4Hr1G041810.5 , HORVU4Hr1G041810.2 , HORVU4Hr1G041810.3 , HORVU4Hr1G041810.1 , HORVU2Hr1G020690.3 , HORVU2Hr1G020690.2 , HORVU2Hr1G020690.1 , HORVU2Hr1G020690.7 , HORVU2Hr1G020690.6 , HORVU2Hr1G020690.5 , HORVU2Hr1G020690.4 , HORVU2Hr1G020690.9 , HORVU2Hr1G020690.8 , HORVU2Hr1G020690.13 , HORVU2Hr1G020690.12 , HORVU2Hr1G020690.11 , HORVU2Hr1G020690.10 , HORVU2Hr1G020690.15 , HORVU2Hr1G020690.14 , HORVU4Hr1G041810.14 , HORVU4Hr1G041810.15 , HORVU4Hr1G041810.16 , HORVU4Hr1G041810.10 , HORVU4Hr1G041810.11 , HORVU4Hr1G041810.12 , HORVU4Hr1G041810.13
Wheat TraesCS2B02G139100 , TraesCS1B02G379200 , TraesCS2A02G119400 , TraesCS4A02G141500 , TraesCS2D02G120400
Populus -


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cDNA sequences
Sobic.001G372800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G483800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tubulin--tyrosine ligase-like protein 12, putative, expressed K16609: tubulin--tyrosine ligase-like protein 12
2 Sobic.002G268100 - K16911: ATP-dependent RNA helicase DDX21
3 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
4 Sobic.009G010300 pumilio-family RNA binding protein, putative, expressed K17943: pumilio RNA-binding family
5 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
6 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
7 Sobic.010G038800 NAP domain containing protein, putative, expressed K11279: NAP1L1, nucleosome assembly protein 1-like 1
8 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
9 Sobic.003G432300 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein K14794: ribosomal RNA-processing protein 12
10 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
11 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
12 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
13 Sobic.005G088900 AGAP007117-PA, putative, expressed -
14 Sobic.003G123200 la domain containing protein, putative, expressed K18757: la-related protein 1
15 Sobic.003G412000 tRNA methyltransferase, putative, expressed K03256: TRM6, tRNA (adenine58-N1)-methyltransferase non-catalytic subunit
16 Sobic.003G407800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
17 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
18 Sobic.003G144000 pentatricopeptide, putative, expressed -
19 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
20 Sobic.010G252700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cullin family domain containing protein, putative, expressed K03349: anaphase-promoting complex subunit 2


Gene co-expression network
sample Sobic001G372800 Sobic001G372800 Sobic001G483800 Sobic001G483800 Sobic001G372800--Sobic001G483800 Sobic002G268100 Sobic002G268100 Sobic001G372800--Sobic002G268100 Sobic003G322200 Sobic003G322200 Sobic001G372800--Sobic003G322200 Sobic009G010300 Sobic009G010300 Sobic001G372800--Sobic009G010300 Sobic009G191500 Sobic009G191500 Sobic001G372800--Sobic009G191500 Sobic001G401400 Sobic001G401400 Sobic001G372800--Sobic001G401400 Sobic010G038800 Sobic010G038800 Sobic001G372800--Sobic010G038800 Sobic005G028100 Sobic005G028100 Sobic001G372800--Sobic005G028100 Sobic003G432300 Sobic003G432300 Sobic001G372800--Sobic003G432300 Sobic001G483800--Sobic001G372800 Sobic001G483800--Sobic009G191500 Sobic008G068100 Sobic008G068100 Sobic001G483800--Sobic008G068100 Sobic001G483800--Sobic002G268100 Sobic001G483800--Sobic009G010300 Sobic003G336500 Sobic003G336500 Sobic001G483800--Sobic003G336500 Sobic001G483800--Sobic005G028100 Sobic005G088900 Sobic005G088900 Sobic001G483800--Sobic005G088900 Sobic001G483800--Sobic003G322200 Sobic002G268100--Sobic009G010300 Sobic002G268100--Sobic001G372800 Sobic002G268100--Sobic001G483800 Sobic004G082700 Sobic004G082700 Sobic002G268100--Sobic004G082700 Sobic002G268100--Sobic010G038800 Sobic002G268100--Sobic003G322200 Sobic003G123200 Sobic003G123200 Sobic002G268100--Sobic003G123200 Sobic010G252700 Sobic010G252700 Sobic002G268100--Sobic010G252700 Sobic002G362200 Sobic002G362200 Sobic002G268100--Sobic002G362200 Sobic003G322200--Sobic001G372800 Sobic003G322200--Sobic001G401400 Sobic003G322200--Sobic003G123200 Sobic003G412000 Sobic003G412000 Sobic003G322200--Sobic003G412000 Sobic003G322200--Sobic010G038800 Sobic006G198600 Sobic006G198600 Sobic003G322200--Sobic006G198600 Sobic003G322200--Sobic003G336500 Sobic002G344500 Sobic002G344500 Sobic003G322200--Sobic002G344500 Sobic003G322200--Sobic001G483800 Sobic009G010300--Sobic002G268100 Sobic009G010300--Sobic001G483800 Sobic009G010300--Sobic001G372800 Sobic009G010300--Sobic008G068100 Sobic009G010300--Sobic003G123200 Sobic001G408300 Sobic001G408300 Sobic009G010300--Sobic001G408300 Sobic010G065800 Sobic010G065800 Sobic009G010300--Sobic010G065800 Sobic008G090000 Sobic008G090000 Sobic009G010300--Sobic008G090000 Sobic009G010300--Sobic009G191500 Sobic009G191500--Sobic008G068100 Sobic004G215900 Sobic004G215900 Sobic009G191500--Sobic004G215900 Sobic009G191500--Sobic001G483800 Sobic005G079201 Sobic005G079201 Sobic009G191500--Sobic005G079201 Sobic009G191500--Sobic005G088900 Sobic002G003300 Sobic002G003300 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic009G191500--Sobic003G336500 Sobic004G036700 Sobic004G036700 Sobic001G401400--Sobic004G036700 Sobic001G401400--Sobic006G198600 Sobic001G401400--Sobic005G028100 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G401400--Sobic001G372800 Sobic006G225400 Sobic006G225400 Sobic001G401400--Sobic006G225400 Sobic001G422500 Sobic001G422500 Sobic001G401400--Sobic001G422500 Sobic003G407600 Sobic003G407600 Sobic001G401400--Sobic003G407600 Sobic010G038800--Sobic004G215900 Sobic003G144000 Sobic003G144000 Sobic010G038800--Sobic003G144000 Sobic010G038800--Sobic009G191500 Sobic010G038800--Sobic010G153300 Sobic010G038800--Sobic001G408300 Sobic010G038800--Sobic001G372800 Sobic010G038800--Sobic003G322200 Sobic010G038800--Sobic003G123200 Sobic010G038800--Sobic008G068100 Sobic005G028100--Sobic004G036700 Sobic008G163500 Sobic008G163500 Sobic005G028100--Sobic008G163500 Sobic005G028100--Sobic006G225400 Sobic010G205900 Sobic010G205900 Sobic005G028100--Sobic010G205900 Sobic005G028100--Sobic003G123200 Sobic005G028100--Sobic003G432300 Sobic002G126800 Sobic002G126800 Sobic005G028100--Sobic002G126800 Sobic001G373000 Sobic001G373000 Sobic005G028100--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic005G028100--Sobic002G132600 Sobic003G432300--Sobic002G126800 Sobic003G432300--Sobic005G028100 Sobic003G432300--Sobic005G088900 Sobic003G432300--Sobic002G132600 Sobic003G432300--Sobic001G373000 Sobic003G432300--Sobic003G144000 Sobic008G000600 Sobic008G000600 Sobic003G432300--Sobic008G000600 Sobic002G043000 Sobic002G043000 Sobic003G432300--Sobic002G043000 Sobic004G038100 Sobic004G038100 Sobic003G432300--Sobic004G038100
Octagon: transcription factors


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