Gene annotation
Transcriptome id Sobic.003G407800.1
Synonym Sb03g044260
Functional annotation nucleolar protein NOP5-1, putative, expressed
UniProt A0A1B6Q7Y9
Pfam PF08156 PF01798
Panther DB PTHR10894 PTHR10894:SF1
NCBI CDD -
KEGG Orthology K14565; nucleolar protein 58
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G05060 : NOP56-like pre RNA processing ribonucleoprotein
RAP-DB (Rice) LOC_Os03g22730.1 : nucleolar protein NOP5-1, putative, expressed
MaizeGDB (Corn) Zm00025a015761 , Zm00025a052382 , Zm00025a002456
Brachypodium KQK21686 , KQK14761
Barley HORVU4Hr1G041810.8 , HORVU4Hr1G041810.9 , HORVU4Hr1G041810.6 , HORVU4Hr1G041810.7 , HORVU4Hr1G041810.4 , HORVU4Hr1G041810.5 , HORVU4Hr1G041810.2 , HORVU4Hr1G041810.3 , HORVU2Hr1G020690.3 , HORVU2Hr1G020690.2 , HORVU2Hr1G020690.1 , HORVU2Hr1G020690.7 , HORVU2Hr1G020690.6 , HORVU2Hr1G020690.5 , HORVU2Hr1G020690.4 , HORVU2Hr1G020690.9 , HORVU2Hr1G020690.8 , HORVU2Hr1G020690.13 , HORVU2Hr1G020690.12 , HORVU2Hr1G020690.11 , HORVU2Hr1G020690.10 , HORVU2Hr1G020690.15 , HORVU2Hr1G020690.14 , HORVU4Hr1G041810.14 , HORVU4Hr1G041810.15 , HORVU4Hr1G041810.16 , HORVU4Hr1G041810.10 , HORVU4Hr1G041810.11 , HORVU4Hr1G041810.12 , HORVU4Hr1G041810.13
Wheat TraesCS1B02G379200 , TraesCS2A02G119400 , TraesCS2B02G139100 , TraesCS4A02G141500 , TraesCS2D02G120400
Populus -


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cDNA sequences
Sobic.003G407800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
2 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
3 Sobic.004G326600 T-complex protein, putative, expressed K09493: CCT1, T-complex protein 1 subunit alpha
4 Sobic.001G372800 nucleolar protein NOP5-1, putative, expressed K14565: nucleolar protein 58
5 Sobic.001G371100 nucleolar protein 5A, putative, expressed K14564: nucleolar protein 56
6 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
7 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
8 Sobic.004G036700 arginine N-methyltransferase 5, putative, expressed K02516: PRMT5, type II protein arginine methyltransferase
9 Sobic.005G028100 nucleolar complex protein 2, putative, expressed K14833: nucleolar complex protein 2
10 Sobic.001G230200 inosine triphosphate pyrophosphatase, putative, expressed K01519: inosine triphosphate pyrophosphatase
11 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
12 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
13 Sobic.003G322200 membrane-associated salt-inducible protein, putative, expressed -
14 Sobic.009G041800 PPR repeat domain containing protein, putative, expressed -
15 Sobic.010G205900 WD repeat-containing protein, putative, expressed K14554: UTP21, U3 small nucleolar RNA-associated protein 21
16 Sobic.006G225400 zinc finger protein, putative, expressed -
17 Sobic.001G178400 tRNA synthetases class II domain containing protein, expressed K04567: KARS, lysyl-tRNA synthetase, class II
18 Sobic.001G334100 1-5-phosphoribosyl-5-5-phosphoribosylaminomethylideneaminoimidazole-4-carboxamide isomerase, chloroplast precursor, putative, expressed K01814: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase
19 Sobic.009G235000 WD domain, G-beta repeat domain containing protein, expressed K14829: pre-rRNA-processing protein IPI3
20 Sobic.008G000600 RNase P subunit p30, putative, expressed K03539: RPP1, ribonuclease P/MRP protein subunit RPP1


Gene co-expression network
sample Sobic003G407800 Sobic003G407800 Sobic001G401400 Sobic001G401400 Sobic003G407800--Sobic001G401400 Sobic006G251600 Sobic006G251600 Sobic003G407800--Sobic006G251600 Sobic004G326600 Sobic004G326600 Sobic003G407800--Sobic004G326600 Sobic001G372800 Sobic001G372800 Sobic003G407800--Sobic001G372800 Sobic001G371100 Sobic001G371100 Sobic003G407800--Sobic001G371100 Sobic008G083400 Sobic008G083400 Sobic003G407800--Sobic008G083400 Sobic003G407600 Sobic003G407600 Sobic003G407800--Sobic003G407600 Sobic004G036700 Sobic004G036700 Sobic003G407800--Sobic004G036700 Sobic005G028100 Sobic005G028100 Sobic003G407800--Sobic005G028100 Sobic001G401400--Sobic004G036700 Sobic006G198600 Sobic006G198600 Sobic001G401400--Sobic006G198600 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic001G401400--Sobic003G407800 Sobic001G401400--Sobic001G372800 Sobic006G225400 Sobic006G225400 Sobic001G401400--Sobic006G225400 Sobic001G422500 Sobic001G422500 Sobic001G401400--Sobic001G422500 Sobic001G401400--Sobic003G407600 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic006G251600--Sobic008G083400 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic004G173100 Sobic004G173100 Sobic006G251600--Sobic004G173100 Sobic006G251600--Sobic001G371100 Sobic004G047200 Sobic004G047200 Sobic004G326600--Sobic004G047200 Sobic002G014400 Sobic002G014400 Sobic004G326600--Sobic002G014400 Sobic002G423500 Sobic002G423500 Sobic004G326600--Sobic002G423500 Sobic001G091900 Sobic001G091900 Sobic004G326600--Sobic001G091900 Sobic004G215700 Sobic004G215700 Sobic004G326600--Sobic004G215700 Sobic002G341800 Sobic002G341800 Sobic004G326600--Sobic002G341800 Sobic005G163700 Sobic005G163700 Sobic004G326600--Sobic005G163700 Sobic002G143000 Sobic002G143000 Sobic004G326600--Sobic002G143000 Sobic001G458700 Sobic001G458700 Sobic004G326600--Sobic001G458700 Sobic001G483800 Sobic001G483800 Sobic001G372800--Sobic001G483800 Sobic002G268100 Sobic002G268100 Sobic001G372800--Sobic002G268100 Sobic001G372800--Sobic003G322200 Sobic009G010300 Sobic009G010300 Sobic001G372800--Sobic009G010300 Sobic009G191500 Sobic009G191500 Sobic001G372800--Sobic009G191500 Sobic001G372800--Sobic001G401400 Sobic010G038800 Sobic010G038800 Sobic001G372800--Sobic010G038800 Sobic001G372800--Sobic005G028100 Sobic003G432300 Sobic003G432300 Sobic001G372800--Sobic003G432300 Sobic010G032700 Sobic010G032700 Sobic001G371100--Sobic010G032700 Sobic001G081900 Sobic001G081900 Sobic001G371100--Sobic001G081900 Sobic001G397000 Sobic001G397000 Sobic001G371100--Sobic001G397000 Sobic001G530800 Sobic001G530800 Sobic001G371100--Sobic001G530800 Sobic001G371100--Sobic006G251600 Sobic001G371100--Sobic004G047200 Sobic001G371100--Sobic008G083400 Sobic004G082700 Sobic004G082700 Sobic001G371100--Sobic004G082700 Sobic001G228200 Sobic001G228200 Sobic001G371100--Sobic001G228200 Sobic008G083400--Sobic006G251600 Sobic001G432300 Sobic001G432300 Sobic008G083400--Sobic001G432300 Sobic008G083400--Sobic001G371100 Sobic004G249300 Sobic004G249300 Sobic008G083400--Sobic004G249300 Sobic009G081500 Sobic009G081500 Sobic008G083400--Sobic009G081500 Sobic002G110400 Sobic002G110400 Sobic008G083400--Sobic002G110400 Sobic007G171200 Sobic007G171200 Sobic008G083400--Sobic007G171200 Sobic008G083400--Sobic001G008500 Sobic008G083400--Sobic003G407800 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic010G247400 Sobic010G247400 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic008G009600 Sobic008G009600 Sobic003G407600--Sobic008G009600 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic004G036700--Sobic005G028100 Sobic004G036700--Sobic001G401400 Sobic004G036700--Sobic001G422500 Sobic004G036700--Sobic006G225400 Sobic008G163500 Sobic008G163500 Sobic004G036700--Sobic008G163500 Sobic003G123200 Sobic003G123200 Sobic004G036700--Sobic003G123200 Sobic003G425100 Sobic003G425100 Sobic004G036700--Sobic003G425100 Sobic004G036700--Sobic006G198600 Sobic004G036700--Sobic010G205900 Sobic005G028100--Sobic004G036700 Sobic005G028100--Sobic008G163500 Sobic005G028100--Sobic006G225400 Sobic005G028100--Sobic010G205900 Sobic005G028100--Sobic003G123200 Sobic005G028100--Sobic003G432300 Sobic002G126800 Sobic002G126800 Sobic005G028100--Sobic002G126800 Sobic001G373000 Sobic001G373000 Sobic005G028100--Sobic001G373000 Sobic002G132600 Sobic002G132600 Sobic005G028100--Sobic002G132600
Octagon: transcription factors


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