Gene annotation
Transcriptome id Sobic.003G407600.1
Synonym Sb03g044240
Functional annotation Mak16 protein domain containing protein, expressed
UniProt C5XGC8
Pfam PF04874 PF01778
Panther DB PTHR23405 PTHR23405:SF4
NCBI CDD -
KEGG Orthology K14831; protein MAK16
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G23280 : MAK16 protein-related
RAP-DB (Rice) LOC_Os07g16950.4 : Mak16 protein domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039277
Brachypodium KQK04571 , KQK04570
Barley HORVU3Hr1G011920.1 , HORVU3Hr1G011920.2 , HORVU3Hr1G011920.3 , HORVU0Hr1G022580.3 , HORVU0Hr1G022580.2 , HORVU0Hr1G022580.1 , HORVU0Hr1G022580.7 , HORVU0Hr1G022580.6 , HORVU0Hr1G022580.5 , HORVU0Hr1G022580.4
Wheat TraesCS3B02G074700 , TraesCS7B02G439100 , TraesCS3A02G062600 , TraesCS3D02G062200 , TraesCS7A02G521900 , TraesCS7D02G511400
Populus -


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cDNA sequences
Sobic.003G407600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
2 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
3 Sobic.003G382500 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
4 Sobic.008G009600 double-stranded RNA binding motif containing protein, expressed -
5 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
6 Sobic.010G216300 dihydrodipicolinate synthase, chloroplast precursor, putative, expressed K01714: 4-hydroxy-tetrahydrodipicolinate synthase
7 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.001G401400 NUC189 domain containing protein, expressed K14546: UTP5, U3 small nucleolar RNA-associated protein 5
9 Sobic.001G230200 inosine triphosphate pyrophosphatase, putative, expressed K01519: inosine triphosphate pyrophosphatase
10 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
11 Sobic.002G344500 pentatricopeptide, putative, expressed K18213: proteinaceous RNase P
12 Sobic.008G098600 DNA-directed RNA polymerase III subunit RPC9, putative, expressed -
13 Sobic.004G011000 expressed protein K11883: RNA-binding protein NOB1
14 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
15 Sobic.006G198600 WD domain, G-beta repeat domain containing protein, expressed K14555: UTP13, U3 small nucleolar RNA-associated protein 13
16 Sobic.006G269900 bystin, putative, expressed K14797: ENP1, essential nuclear protein 1
17 Sobic.009G040500 glioma tumor suppressor candidate region gene 2 protein, putative, expressed K14840: NOP53, nucleolar protein 53
18 Sobic.001G527300 - K14777: DDX47, ATP-dependent RNA helicase DDX47/RRP3
19 Sobic.010G073200 nucleolar GTP-binding protein 1, putative, expressed K06943: nucleolar GTP-binding protein
20 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27


Gene co-expression network
sample Sobic003G407600 Sobic003G407600 Sobic006G084000 Sobic006G084000 Sobic003G407600--Sobic006G084000 Sobic010G247400 Sobic010G247400 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic008G009600 Sobic008G009600 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic001G401400 Sobic001G401400 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic006G269900 Sobic006G269900 Sobic006G084000--Sobic006G269900 Sobic008G160000 Sobic008G160000 Sobic006G084000--Sobic008G160000 Sobic006G010400 Sobic006G010400 Sobic006G084000--Sobic006G010400 Sobic006G084000--Sobic003G407600 Sobic004G224600 Sobic004G224600 Sobic006G084000--Sobic004G224600 Sobic001G259000 Sobic001G259000 Sobic006G084000--Sobic001G259000 Sobic006G084000--Sobic003G382500 Sobic006G084000--Sobic010G247400 Sobic009G246500 Sobic009G246500 Sobic006G084000--Sobic009G246500 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic009G138700 Sobic009G138700 Sobic003G382500--Sobic009G138700 Sobic008G098600 Sobic008G098600 Sobic003G382500--Sobic008G098600 Sobic003G382500--Sobic006G084000 Sobic003G382500--Sobic003G407600 Sobic001G017700 Sobic001G017700 Sobic003G382500--Sobic001G017700 Sobic003G287100 Sobic003G287100 Sobic003G382500--Sobic003G287100 Sobic007G112600 Sobic007G112600 Sobic003G382500--Sobic007G112600 Sobic010G007100 Sobic010G007100 Sobic003G382500--Sobic010G007100 Sobic003G382500--Sobic008G009600 Sobic006G049600 Sobic006G049600 Sobic008G009600--Sobic006G049600 Sobic004G011000 Sobic004G011000 Sobic008G009600--Sobic004G011000 Sobic008G009600--Sobic001G017700 Sobic001G142100 Sobic001G142100 Sobic008G009600--Sobic001G142100 Sobic010G073200 Sobic010G073200 Sobic008G009600--Sobic010G073200 Sobic008G009600--Sobic003G407600 Sobic001G145400 Sobic001G145400 Sobic008G009600--Sobic001G145400 Sobic009G101200 Sobic009G101200 Sobic008G009600--Sobic009G101200 Sobic006G226300 Sobic006G226300 Sobic008G009600--Sobic006G226300 Sobic009G071700 Sobic009G071700 Sobic004G173100--Sobic009G071700 Sobic006G251600 Sobic006G251600 Sobic004G173100--Sobic006G251600 Sobic003G425100 Sobic003G425100 Sobic004G173100--Sobic003G425100 Sobic002G262100 Sobic002G262100 Sobic004G173100--Sobic002G262100 Sobic006G198600 Sobic006G198600 Sobic004G173100--Sobic006G198600 Sobic002G399200 Sobic002G399200 Sobic004G173100--Sobic002G399200 Sobic004G173100--Sobic003G407600 Sobic005G100900 Sobic005G100900 Sobic004G173100--Sobic005G100900 Sobic008G163500 Sobic008G163500 Sobic004G173100--Sobic008G163500 Sobic006G157000 Sobic006G157000 Sobic010G216300--Sobic006G157000 Sobic010G216300--Sobic003G407600 Sobic010G216300--Sobic006G010400 Sobic001G007800 Sobic001G007800 Sobic010G216300--Sobic001G007800 Sobic010G216300--Sobic006G084000 Sobic010G216300--Sobic008G160000 Sobic003G309300 Sobic003G309300 Sobic010G216300--Sobic003G309300 Sobic010G216300--Sobic009G071700 Sobic007G143500 Sobic007G143500 Sobic010G216300--Sobic007G143500 Sobic010G083900 Sobic010G083900 Sobic001G322600--Sobic010G083900 Sobic009G163600 Sobic009G163600 Sobic001G322600--Sobic009G163600 Sobic002G344500 Sobic002G344500 Sobic001G322600--Sobic002G344500 Sobic003G014700 Sobic003G014700 Sobic001G322600--Sobic003G014700 Sobic004G354000 Sobic004G354000 Sobic001G322600--Sobic004G354000 Sobic010G224700 Sobic010G224700 Sobic001G322600--Sobic010G224700 Sobic001G322600--Sobic003G407600 Sobic005G028300 Sobic005G028300 Sobic001G322600--Sobic005G028300 Sobic002G378100 Sobic002G378100 Sobic001G322600--Sobic002G378100 Sobic004G036700 Sobic004G036700 Sobic001G401400--Sobic004G036700 Sobic001G401400--Sobic006G198600 Sobic005G028100 Sobic005G028100 Sobic001G401400--Sobic005G028100 Sobic003G322200 Sobic003G322200 Sobic001G401400--Sobic003G322200 Sobic003G407800 Sobic003G407800 Sobic001G401400--Sobic003G407800 Sobic001G372800 Sobic001G372800 Sobic001G401400--Sobic001G372800 Sobic006G225400 Sobic006G225400 Sobic001G401400--Sobic006G225400 Sobic001G422500 Sobic001G422500 Sobic001G401400--Sobic001G422500 Sobic001G401400--Sobic003G407600 Sobic001G230200--Sobic003G407600 Sobic009G211700 Sobic009G211700 Sobic001G230200--Sobic009G211700 Sobic001G230200--Sobic010G247400 Sobic006G056600 Sobic006G056600 Sobic001G230200--Sobic006G056600 Sobic003G196800 Sobic003G196800 Sobic001G230200--Sobic003G196800 Sobic001G230200--Sobic003G407800 Sobic001G091900 Sobic001G091900 Sobic001G230200--Sobic001G091900 Sobic001G230200--Sobic001G401400 Sobic005G027300 Sobic005G027300 Sobic001G230200--Sobic005G027300
Octagon: transcription factors


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