Gene annotation
Transcriptome id Sobic.010G216300.1
Synonym Sb10g026260, DHDPS, DHDPS1
Functional annotation dihydrodipicolinate synthase, chloroplast precursor, putative, expressed
UniProt C5Z796
Pfam PF00701
Panther DB PTHR12128 PTHR12128:SF15
NCBI CDD -
KEGG Orthology K01714; 4-hydroxy-tetrahydrodipicolinate synthase
Gene Ontology GO:0016829; lyase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G60880 : dihydrodipicolinate synthase 1
RAP-DB (Rice) LOC_Os04g18200.1 : dihydrodipicolinate synthase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051673 , Zm00025a010128
Brachypodium KQK04713 , KQJ84143 , KQJ84142
Barley HORVU2Hr1G094420.6 , HORVU2Hr1G094420.5 , HORVU2Hr1G094420.7 , HORVU2Hr1G113410.1 , HORVU2Hr1G113410.2 , HORVU2Hr1G113410.3 , HORVU2Hr1G094420.3 , HORVU2Hr1G094420.2 , HORVU2Hr1G113410.6 , HORVU2Hr1G113410.4 , HORVU2Hr1G113410.5 , HORVU2Hr1G094420.1 , HORVU2Hr1G113450.1 , HORVU2Hr1G113450.4 , HORVU2Hr1G113450.5 , HORVU2Hr1G094420.4 , HORVU2Hr1G113450.2 , HORVU2Hr1G113450.3
Wheat TraesCS2D02G513500 , TraesCS2D02G395600 , TraesCS2A02G397900 , TraesCS2B02G539900 , TraesCS2B02G539900 , TraesCS2A02G397900 , TraesCS2D02G513500 , TraesCS2A02G511900
Populus -


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cDNA sequences
Sobic.010G216300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G157000 adenylosuccinate lyase, putative, expressed K01756: purB, adenylosuccinate lyase
2 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
3 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
4 Sobic.001G007800 WD domain, G-beta repeat domain containing protein, expressed K11806: DCAF13, DDB1- and CUL4-associated factor 13
5 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
6 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
7 Sobic.003G309300 radical SAM enzyme, putative, expressed K03644: lipA, LIAS, LIP1, lipoyl synthase
8 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
9 Sobic.007G143500 splicing factor 3B subunit 5, putative, expressed K12832: SF3B5, splicing factor 3B subunit 5
10 Sobic.006G237000 3-oxoacyl-synthase III, chloroplast precursor, putative, expressed K00648: 3-oxoacyl-[acyl-carrier-protein] synthase III
11 Sobic.002G116500 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6
12 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
13 Sobic.010G125100 39S ribosomal protein L46, mitochondrial precursor, putative, expressed K17427: large subunit ribosomal protein L46
14 Sobic.002G394600 peptidase, T1 family, putative, expressed K02727: 20S proteasome subunit alpha 7
15 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
16 Sobic.001G537500 GTP-binding protein, putative, expressed K06944: uncharacterized protein
17 Sobic.002G365900 WD repeat-containing protein 12, putative, expressed K14863: WDR12, ribosome biogenesis protein
18 Sobic.001G322600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.002G242700 expressed protein K15202: GTF3C5, general transcription factor 3C polypeptide 5 (transcription factor C subunit 1)
20 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19


Gene co-expression network
sample Sobic010G216300 Sobic010G216300 Sobic006G157000 Sobic006G157000 Sobic010G216300--Sobic006G157000 Sobic003G407600 Sobic003G407600 Sobic010G216300--Sobic003G407600 Sobic006G010400 Sobic006G010400 Sobic010G216300--Sobic006G010400 Sobic001G007800 Sobic001G007800 Sobic010G216300--Sobic001G007800 Sobic006G084000 Sobic006G084000 Sobic010G216300--Sobic006G084000 Sobic008G160000 Sobic008G160000 Sobic010G216300--Sobic008G160000 Sobic003G309300 Sobic003G309300 Sobic010G216300--Sobic003G309300 Sobic009G071700 Sobic009G071700 Sobic010G216300--Sobic009G071700 Sobic007G143500 Sobic007G143500 Sobic010G216300--Sobic007G143500 Sobic006G157000--Sobic003G309300 Sobic006G157000--Sobic009G071700 Sobic009G072000 Sobic009G072000 Sobic006G157000--Sobic009G072000 Sobic006G157000--Sobic010G216300 Sobic001G468600 Sobic001G468600 Sobic006G157000--Sobic001G468600 Sobic008G017200 Sobic008G017200 Sobic006G157000--Sobic008G017200 Sobic006G157000--Sobic006G010400 Sobic004G124100 Sobic004G124100 Sobic006G157000--Sobic004G124100 Sobic007G114000 Sobic007G114000 Sobic006G157000--Sobic007G114000 Sobic003G407600--Sobic006G084000 Sobic010G247400 Sobic010G247400 Sobic003G407600--Sobic010G247400 Sobic003G382500 Sobic003G382500 Sobic003G407600--Sobic003G382500 Sobic008G009600 Sobic008G009600 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic001G401400 Sobic001G401400 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic001G251600 Sobic001G251600 Sobic006G010400--Sobic001G251600 Sobic006G010400--Sobic006G084000 Sobic007G071900 Sobic007G071900 Sobic006G010400--Sobic007G071900 Sobic001G537500 Sobic001G537500 Sobic006G010400--Sobic001G537500 Sobic009G249800 Sobic009G249800 Sobic006G010400--Sobic009G249800 Sobic007G140400 Sobic007G140400 Sobic006G010400--Sobic007G140400 Sobic008G051200 Sobic008G051200 Sobic006G010400--Sobic008G051200 Sobic004G257100 Sobic004G257100 Sobic006G010400--Sobic004G257100 Sobic001G460500 Sobic001G460500 Sobic006G010400--Sobic001G460500 Sobic002G150700 Sobic002G150700 Sobic001G007800--Sobic002G150700 Sobic004G307500 Sobic004G307500 Sobic001G007800--Sobic004G307500 Sobic004G340400 Sobic004G340400 Sobic001G007800--Sobic004G340400 Sobic001G007800--Sobic007G143500 Sobic001G334100 Sobic001G334100 Sobic001G007800--Sobic001G334100 Sobic009G235000 Sobic009G235000 Sobic001G007800--Sobic009G235000 Sobic006G193300 Sobic006G193300 Sobic001G007800--Sobic006G193300 Sobic001G007800--Sobic008G160000 Sobic007G089800 Sobic007G089800 Sobic001G007800--Sobic007G089800 Sobic006G269900 Sobic006G269900 Sobic006G084000--Sobic006G269900 Sobic006G084000--Sobic008G160000 Sobic006G084000--Sobic006G010400 Sobic006G084000--Sobic003G407600 Sobic004G224600 Sobic004G224600 Sobic006G084000--Sobic004G224600 Sobic001G259000 Sobic001G259000 Sobic006G084000--Sobic001G259000 Sobic006G084000--Sobic003G382500 Sobic006G084000--Sobic010G247400 Sobic009G246500 Sobic009G246500 Sobic006G084000--Sobic009G246500 Sobic008G160000--Sobic004G340400 Sobic001G455800 Sobic001G455800 Sobic008G160000--Sobic001G455800 Sobic008G160000--Sobic001G259000 Sobic009G138700 Sobic009G138700 Sobic008G160000--Sobic009G138700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic001G145400 Sobic001G145400 Sobic008G160000--Sobic001G145400 Sobic006G002800 Sobic006G002800 Sobic008G160000--Sobic006G002800 Sobic008G160000--Sobic004G224600 Sobic004G275600 Sobic004G275600 Sobic003G309300--Sobic004G275600 Sobic003G309300--Sobic006G157000 Sobic003G165101 Sobic003G165101 Sobic003G309300--Sobic003G165101 Sobic003G309300--Sobic007G071900 Sobic008G038600 Sobic008G038600 Sobic003G309300--Sobic008G038600 Sobic006G237000 Sobic006G237000 Sobic003G309300--Sobic006G237000 Sobic009G124000 Sobic009G124000 Sobic003G309300--Sobic009G124000 Sobic003G309300--Sobic001G537500 Sobic003G309300--Sobic010G216300 Sobic006G251600 Sobic006G251600 Sobic009G071700--Sobic006G251600 Sobic001G457200 Sobic001G457200 Sobic009G071700--Sobic001G457200 Sobic006G198600 Sobic006G198600 Sobic009G071700--Sobic006G198600 Sobic009G071700--Sobic004G173100 Sobic007G137350 Sobic007G137350 Sobic009G071700--Sobic007G137350 Sobic006G225400 Sobic006G225400 Sobic009G071700--Sobic006G225400 Sobic005G100900 Sobic005G100900 Sobic009G071700--Sobic005G100900 Sobic003G425100 Sobic003G425100 Sobic009G071700--Sobic003G425100 Sobic007G092200 Sobic007G092200 Sobic009G071700--Sobic007G092200 Sobic007G143500--Sobic001G334100 Sobic007G143500--Sobic004G307500 Sobic001G168900 Sobic001G168900 Sobic007G143500--Sobic001G168900 Sobic007G143500--Sobic001G007800 Sobic001G416700 Sobic001G416700 Sobic007G143500--Sobic001G416700 Sobic005G178700 Sobic005G178700 Sobic007G143500--Sobic005G178700 Sobic008G098600 Sobic008G098600 Sobic007G143500--Sobic008G098600 Sobic002G005000 Sobic002G005000 Sobic007G143500--Sobic002G005000 Sobic004G235500 Sobic004G235500 Sobic007G143500--Sobic004G235500
Octagon: transcription factors


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