Gene annotation
Transcriptome id Sobic.006G084000.1
Synonym Sb06g017040
Functional annotation CDK5RAP1, putative, expressed
UniProt C5Y8P7
Pfam PF04055 PF00919
Panther DB PTHR11918 PTHR11918:SF45
NCBI CDD -
KEGG Orthology K15865; threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
Gene Ontology GO:0003824; catalytic activity GO:0009451RNA modification


Orthologs (automatic annotation)
TAIR AT1G72090 : Methylthiotransferase
RAP-DB (Rice) LOC_Os04g35480.1 : CDK5RAP1, putative, expressed
MaizeGDB (Corn) Zm00025a056086
Brachypodium KQK20450 , KQK20449
Barley HORVU2Hr1G075910.10 , HORVU2Hr1G075910.11 , HORVU2Hr1G075910.12 , HORVU2Hr1G075910.7 , HORVU2Hr1G075910.4 , HORVU2Hr1G075910.5 , HORVU2Hr1G075910.2 , HORVU2Hr1G075910.3 , HORVU2Hr1G075910.1 , HORVU2Hr1G075910.8 , HORVU2Hr1G075910.9 , HORVU2Hr1G075910.6
Wheat TraesCS2D02G303700 , TraesCS2B02G322000 , TraesCS2A02G305200 , TraesCS2A02G305200
Populus -


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cDNA sequences
Sobic.006G084000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G269900 bystin, putative, expressed K14797: ENP1, essential nuclear protein 1
2 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
3 Sobic.006G010400 tRNA-dihydrouridine synthase 3-like, putative, expressed K05544: tRNA-dihydrouridine synthase 3
4 Sobic.003G407600 Mak16 protein domain containing protein, expressed K14831: protein MAK16
5 Sobic.004G224600 expressed protein -
6 Sobic.001G259000 initiation factor 2 subunit family domain containing protein, expressed K03754: translation initiation factor eIF-2B subunit beta
7 Sobic.003G382500 serine/threonine-protein kinase RIO-like, putative, expressed K07179: RIO kinase 2
8 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
9 Sobic.009G246500 N-acetyltransferase 10, putative, expressed K14521: NAT10, N-acetyltransferase 10
10 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
11 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
12 Sobic.001G251600 SET domain protein 123, putative, expressed K11426: [histone H3]-lysine4/36 N-trimethyltransferase SMYD
13 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE
14 Sobic.004G357400 beta-catenin-like protein 1, putative, expressed K12864: beta-catenin-like protein 1
15 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
16 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)
17 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
18 Sobic.006G193300 nucleolar complex protein, putative, expressed K14771: NOC4, U3 small nucleolar RNA-associated protein 19
19 Sobic.009G138700 WD repeat-containing protein 55, putative, expressed -
20 Sobic.002G116500 methyltransferase, putative, expressed K00599: methyltransferase-like protein 6


Gene co-expression network
sample Sobic006G084000 Sobic006G084000 Sobic006G269900 Sobic006G269900 Sobic006G084000--Sobic006G269900 Sobic008G160000 Sobic008G160000 Sobic006G084000--Sobic008G160000 Sobic006G010400 Sobic006G010400 Sobic006G084000--Sobic006G010400 Sobic003G407600 Sobic003G407600 Sobic006G084000--Sobic003G407600 Sobic004G224600 Sobic004G224600 Sobic006G084000--Sobic004G224600 Sobic001G259000 Sobic001G259000 Sobic006G084000--Sobic001G259000 Sobic003G382500 Sobic003G382500 Sobic006G084000--Sobic003G382500 Sobic010G247400 Sobic010G247400 Sobic006G084000--Sobic010G247400 Sobic009G246500 Sobic009G246500 Sobic006G084000--Sobic009G246500 Sobic006G269900--Sobic006G084000 Sobic006G269900--Sobic008G160000 Sobic004G256000 Sobic004G256000 Sobic006G269900--Sobic004G256000 Sobic006G269900--Sobic006G010400 Sobic009G249800 Sobic009G249800 Sobic006G269900--Sobic009G249800 Sobic006G269900--Sobic003G407600 Sobic004G252000 Sobic004G252000 Sobic006G269900--Sobic004G252000 Sobic006G269900--Sobic010G247400 Sobic009G045900 Sobic009G045900 Sobic006G269900--Sobic009G045900 Sobic004G340400 Sobic004G340400 Sobic008G160000--Sobic004G340400 Sobic001G455800 Sobic001G455800 Sobic008G160000--Sobic001G455800 Sobic008G160000--Sobic001G259000 Sobic009G138700 Sobic009G138700 Sobic008G160000--Sobic009G138700 Sobic002G150700 Sobic002G150700 Sobic008G160000--Sobic002G150700 Sobic009G016400 Sobic009G016400 Sobic008G160000--Sobic009G016400 Sobic001G145400 Sobic001G145400 Sobic008G160000--Sobic001G145400 Sobic006G002800 Sobic006G002800 Sobic008G160000--Sobic006G002800 Sobic008G160000--Sobic004G224600 Sobic001G251600 Sobic001G251600 Sobic006G010400--Sobic001G251600 Sobic006G010400--Sobic006G084000 Sobic007G071900 Sobic007G071900 Sobic006G010400--Sobic007G071900 Sobic001G537500 Sobic001G537500 Sobic006G010400--Sobic001G537500 Sobic006G010400--Sobic009G249800 Sobic007G140400 Sobic007G140400 Sobic006G010400--Sobic007G140400 Sobic008G051200 Sobic008G051200 Sobic006G010400--Sobic008G051200 Sobic004G257100 Sobic004G257100 Sobic006G010400--Sobic004G257100 Sobic001G460500 Sobic001G460500 Sobic006G010400--Sobic001G460500 Sobic003G407600--Sobic006G084000 Sobic003G407600--Sobic010G247400 Sobic003G407600--Sobic003G382500 Sobic008G009600 Sobic008G009600 Sobic003G407600--Sobic008G009600 Sobic004G173100 Sobic004G173100 Sobic003G407600--Sobic004G173100 Sobic010G216300 Sobic010G216300 Sobic003G407600--Sobic010G216300 Sobic001G322600 Sobic001G322600 Sobic003G407600--Sobic001G322600 Sobic001G401400 Sobic001G401400 Sobic003G407600--Sobic001G401400 Sobic001G230200 Sobic001G230200 Sobic003G407600--Sobic001G230200 Sobic004G224600--Sobic006G002800 Sobic003G146600 Sobic003G146600 Sobic004G224600--Sobic003G146600 Sobic001G376900 Sobic001G376900 Sobic004G224600--Sobic001G376900 Sobic006G125500 Sobic006G125500 Sobic004G224600--Sobic006G125500 Sobic002G235200 Sobic002G235200 Sobic004G224600--Sobic002G235200 Sobic004G224600--Sobic009G246500 Sobic003G042400 Sobic003G042400 Sobic004G224600--Sobic003G042400 Sobic004G224600--Sobic001G145400 Sobic006G086600 Sobic006G086600 Sobic004G224600--Sobic006G086600 Sobic009G143800 Sobic009G143800 Sobic001G259000--Sobic009G143800 Sobic004G156800 Sobic004G156800 Sobic001G259000--Sobic004G156800 Sobic006G270600 Sobic006G270600 Sobic001G259000--Sobic006G270600 Sobic009G101200 Sobic009G101200 Sobic001G259000--Sobic009G101200 Sobic001G259000--Sobic001G145400 Sobic001G259000--Sobic008G160000 Sobic007G039400 Sobic007G039400 Sobic001G259000--Sobic007G039400 Sobic001G259000--Sobic004G340400 Sobic001G259000--Sobic009G138700 Sobic003G382500--Sobic009G138700 Sobic008G098600 Sobic008G098600 Sobic003G382500--Sobic008G098600 Sobic003G382500--Sobic006G084000 Sobic003G382500--Sobic003G407600 Sobic001G017700 Sobic001G017700 Sobic003G382500--Sobic001G017700 Sobic003G287100 Sobic003G287100 Sobic003G382500--Sobic003G287100 Sobic007G112600 Sobic007G112600 Sobic003G382500--Sobic007G112600 Sobic010G007100 Sobic010G007100 Sobic003G382500--Sobic010G007100 Sobic003G382500--Sobic008G009600 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic001G370300 Sobic001G370300 Sobic010G247400--Sobic001G370300 Sobic010G247400--Sobic003G407600 Sobic006G233300 Sobic006G233300 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic008G049100 Sobic008G049100 Sobic009G246500--Sobic008G049100 Sobic010G205900 Sobic010G205900 Sobic009G246500--Sobic010G205900 Sobic003G123200 Sobic003G123200 Sobic009G246500--Sobic003G123200 Sobic008G163500 Sobic008G163500 Sobic009G246500--Sobic008G163500 Sobic005G098800 Sobic005G098800 Sobic009G246500--Sobic005G098800 Sobic002G071400 Sobic002G071400 Sobic009G246500--Sobic002G071400 Sobic002G423400 Sobic002G423400 Sobic009G246500--Sobic002G423400 Sobic009G246500--Sobic004G224600 Sobic009G246500--Sobic009G101200
Octagon: transcription factors


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