Gene annotation
Transcriptome id Sobic.006G002800.1
Synonym Sb06g000450
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt C5YB95
Pfam PF00642 PF13847 PF05958
Panther DB PTHR11061 PTHR11061:SF24
NCBI CDD KOG2187; tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes
KEGG Orthology K15332; tRNA (uracil-5-)-methyltransferase
Gene Ontology GO:0008173; RNA methyltransferase activity GO:0006396RNA processing


Orthologs (automatic annotation)
TAIR AT2G28450 : zinc finger (CCCH-type) family protein
RAP-DB (Rice) LOC_Os04g01480.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a055505 , Zm00025a012190
Brachypodium KQJ81687
Barley HORVU2Hr1G005690.10 , HORVU2Hr1G005690.11 , HORVU2Hr1G005690.12 , HORVU2Hr1G005690.13 , HORVU2Hr1G005690.8 , HORVU2Hr1G005690.9 , HORVU2Hr1G005690.6 , HORVU2Hr1G005690.7 , HORVU2Hr1G005690.4 , HORVU2Hr1G005690.5 , HORVU2Hr1G005690.2 , HORVU2Hr1G005690.3 , HORVU2Hr1G005690.1
Wheat TraesCS2A02G039200 , TraesCS2B02G051800 , TraesCS2D02G037700 , TraesCS2D02G037700
Populus PNT18964 , PNT18965 , PNT18966


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cDNA sequences
Sobic.006G002800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
2 Sobic.004G224600 expressed protein -
3 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
4 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
5 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
6 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
7 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
8 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
9 Sobic.008G147200 tubulin, putative, expressed -
10 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
11 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
12 Sobic.006G125500 expressed protein -
13 Sobic.004G332400 neurochondrin family protein, putative, expressed -
14 Sobic.008G160000 tetratricopeptide repeat domain containing protein, expressed -
15 Sobic.004G340400 translation initiation factor eIF-2B subunit epsilon, putative, expressed K03240: translation initiation factor eIF-2B subunit epsilon
16 Sobic.007G089800 SET domain containing protein, expressed K19199: protein-histidine N-methyltransferase
17 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
18 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
19 Sobic.001G461300 PPR repeat domain containing protein, putative, expressed -
20 Sobic.002G371600 Spc97 / Spc98 family protein, putative, expressed K16572: TUBGCP5, gamma-tubulin complex component 5


Gene co-expression network
sample Sobic006G002800 Sobic006G002800 Sobic003G308500 Sobic003G308500 Sobic006G002800--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic006G002800--Sobic004G224600 Sobic002G150700 Sobic002G150700 Sobic006G002800--Sobic002G150700 Sobic001G145400 Sobic001G145400 Sobic006G002800--Sobic001G145400 Sobic003G146600 Sobic003G146600 Sobic006G002800--Sobic003G146600 Sobic010G007100 Sobic010G007100 Sobic006G002800--Sobic010G007100 Sobic004G321700 Sobic004G321700 Sobic006G002800--Sobic004G321700 Sobic009G234700 Sobic009G234700 Sobic006G002800--Sobic009G234700 Sobic008G147200 Sobic008G147200 Sobic006G002800--Sobic008G147200 Sobic003G308500--Sobic003G146600 Sobic006G125500 Sobic006G125500 Sobic003G308500--Sobic006G125500 Sobic003G296900 Sobic003G296900 Sobic003G308500--Sobic003G296900 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic002G371600 Sobic002G371600 Sobic003G308500--Sobic002G371600 Sobic003G012000 Sobic003G012000 Sobic003G308500--Sobic003G012000 Sobic003G308500--Sobic001G145400 Sobic006G245900 Sobic006G245900 Sobic003G308500--Sobic006G245900 Sobic004G224600--Sobic006G002800 Sobic004G224600--Sobic003G146600 Sobic001G376900 Sobic001G376900 Sobic004G224600--Sobic001G376900 Sobic004G224600--Sobic006G125500 Sobic002G235200 Sobic002G235200 Sobic004G224600--Sobic002G235200 Sobic009G246500 Sobic009G246500 Sobic004G224600--Sobic009G246500 Sobic003G042400 Sobic003G042400 Sobic004G224600--Sobic003G042400 Sobic004G224600--Sobic001G145400 Sobic006G086600 Sobic006G086600 Sobic004G224600--Sobic006G086600 Sobic002G408900 Sobic002G408900 Sobic002G150700--Sobic002G408900 Sobic002G150700--Sobic006G002800 Sobic001G455800 Sobic001G455800 Sobic002G150700--Sobic001G455800 Sobic002G150700--Sobic003G146600 Sobic001G099900 Sobic001G099900 Sobic002G150700--Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic002G150700--Sobic004G208500 Sobic002G398700 Sobic002G398700 Sobic002G150700--Sobic002G398700 Sobic002G150700--Sobic001G145400 Sobic003G304400 Sobic003G304400 Sobic002G150700--Sobic003G304400 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic010G059500 Sobic010G059500 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic003G146600--Sobic003G308500 Sobic003G146600--Sobic004G224600 Sobic003G146600--Sobic006G002800 Sobic003G146600--Sobic002G235200 Sobic003G146600--Sobic001G145400 Sobic003G146600--Sobic002G150700 Sobic001G065100 Sobic001G065100 Sobic003G146600--Sobic001G065100 Sobic003G039000 Sobic003G039000 Sobic003G146600--Sobic003G039000 Sobic003G146600--Sobic003G012000 Sobic010G007100--Sobic001G145400 Sobic010G007100--Sobic008G147200 Sobic010G007100--Sobic004G340400 Sobic010G007100--Sobic006G086600 Sobic005G137700 Sobic005G137700 Sobic010G007100--Sobic005G137700 Sobic010G007100--Sobic006G077200 Sobic010G007100--Sobic002G235200 Sobic010G007100--Sobic006G002800 Sobic010G007100--Sobic003G042400 Sobic004G321700--Sobic008G147200 Sobic001G393900 Sobic001G393900 Sobic004G321700--Sobic001G393900 Sobic004G332400 Sobic004G332400 Sobic004G321700--Sobic004G332400 Sobic001G346900 Sobic001G346900 Sobic004G321700--Sobic001G346900 Sobic004G321700--Sobic006G002800 Sobic004G309900 Sobic004G309900 Sobic004G321700--Sobic004G309900 Sobic001G003500 Sobic001G003500 Sobic004G321700--Sobic001G003500 Sobic003G362900 Sobic003G362900 Sobic004G321700--Sobic003G362900 Sobic002G052700 Sobic002G052700 Sobic004G321700--Sobic002G052700 Sobic004G256500 Sobic004G256500 Sobic009G234700--Sobic004G256500 Sobic004G131300 Sobic004G131300 Sobic009G234700--Sobic004G131300 Sobic009G234700--Sobic001G145400 Sobic004G053500 Sobic004G053500 Sobic009G234700--Sobic004G053500 Sobic009G234700--Sobic006G002800 Sobic002G371700 Sobic002G371700 Sobic009G234700--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic009G234700--Sobic003G046300 Sobic005G172500 Sobic005G172500 Sobic009G234700--Sobic005G172500 Sobic009G234700--Sobic001G455800 Sobic008G147200--Sobic004G321700 Sobic008G147200--Sobic005G137700 Sobic006G269800 Sobic006G269800 Sobic008G147200--Sobic006G269800 Sobic010G186600 Sobic010G186600 Sobic008G147200--Sobic010G186600 Sobic002G145800 Sobic002G145800 Sobic008G147200--Sobic002G145800 Sobic008G147200--Sobic010G007100 Sobic008G147200--Sobic001G346900 Sobic008G147200--Sobic003G042400 Sobic001G291800 Sobic001G291800 Sobic008G147200--Sobic001G291800
Octagon: transcription factors


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