Gene annotation
Transcriptome id Sobic.003G146600.1,Sobic.003G146600.2
Synonym APUM23, Sb03g012680, PUM23
Functional annotation pumilio-family RNA binding repeat containing protein, expressed
UniProt A0A1B6Q397
Pfam -
Panther DB PTHR13102 PTHR13102:SF0
NCBI CDD KOG2188; Predicted RNA-binding protein, contains Pumilio domains
KEGG Orthology K14790; nucleolar protein 9
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G72320 : pumilio 23
RAP-DB (Rice) LOC_Os10g25110.1 : pumilio-family RNA binding repeat containing protein, expressed
MaizeGDB (Corn) Zm00025a004049
Brachypodium PNT64179 , PNT64180
Barley HORVU6Hr1G013720.4 , HORVU6Hr1G013720.1 , HORVU6Hr1G013720.3 , HORVU6Hr1G013720.2 , HORVU6Hr1G013720.5
Wheat TraesCS6A02G078600 , TraesCS6B02G105700 , TraesCS6D02G072200
Populus -


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cDNA sequences
Sobic.003G146600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
2 Sobic.004G224600 expressed protein -
3 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
4 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
5 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
6 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
7 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
8 Sobic.003G039000 GPI transamidase component Gpi16 subunit family protein, putative, expressed K05292: GPI-anchor transamidase subunit T
9 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
10 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
11 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
12 Sobic.001G015400 elongation factor, putative, expressed K02355: fusA, GFM, elongation factor G
13 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
14 Sobic.006G125500 expressed protein -
15 Sobic.005G026400 pentatricopeptide repeat domain containing protein, putative, expressed -
16 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
17 Sobic.010G080700 DNA-directed RNA polymerase subunit, putative, expressed K03021: RPC2, DNA-directed RNA polymerase III subunit RPC2
18 Sobic.007G112600 co-chaperone GrpE protein, putative, expressed K03687: molecular chaperone GrpE
19 Sobic.010G055700 tetratricopeptide repeat domain containing protein, expressed K03217: yidC, spoIIIJ, OXA1, YidC/Oxa1 family membrane protein insertase
20 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -


Gene co-expression network
sample Sobic003G146600 Sobic003G146600 Sobic003G308500 Sobic003G308500 Sobic003G146600--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic003G146600--Sobic004G224600 Sobic006G002800 Sobic006G002800 Sobic003G146600--Sobic006G002800 Sobic002G235200 Sobic002G235200 Sobic003G146600--Sobic002G235200 Sobic001G145400 Sobic001G145400 Sobic003G146600--Sobic001G145400 Sobic002G150700 Sobic002G150700 Sobic003G146600--Sobic002G150700 Sobic001G065100 Sobic001G065100 Sobic003G146600--Sobic001G065100 Sobic003G039000 Sobic003G039000 Sobic003G146600--Sobic003G039000 Sobic003G012000 Sobic003G012000 Sobic003G146600--Sobic003G012000 Sobic003G308500--Sobic003G146600 Sobic006G125500 Sobic006G125500 Sobic003G308500--Sobic006G125500 Sobic003G296900 Sobic003G296900 Sobic003G308500--Sobic003G296900 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic002G371600 Sobic002G371600 Sobic003G308500--Sobic002G371600 Sobic003G308500--Sobic003G012000 Sobic003G308500--Sobic001G145400 Sobic006G245900 Sobic006G245900 Sobic003G308500--Sobic006G245900 Sobic004G224600--Sobic006G002800 Sobic004G224600--Sobic003G146600 Sobic001G376900 Sobic001G376900 Sobic004G224600--Sobic001G376900 Sobic004G224600--Sobic006G125500 Sobic004G224600--Sobic002G235200 Sobic009G246500 Sobic009G246500 Sobic004G224600--Sobic009G246500 Sobic003G042400 Sobic003G042400 Sobic004G224600--Sobic003G042400 Sobic004G224600--Sobic001G145400 Sobic006G086600 Sobic006G086600 Sobic004G224600--Sobic006G086600 Sobic006G002800--Sobic003G308500 Sobic006G002800--Sobic004G224600 Sobic006G002800--Sobic002G150700 Sobic006G002800--Sobic001G145400 Sobic006G002800--Sobic003G146600 Sobic010G007100 Sobic010G007100 Sobic006G002800--Sobic010G007100 Sobic004G321700 Sobic004G321700 Sobic006G002800--Sobic004G321700 Sobic009G234700 Sobic009G234700 Sobic006G002800--Sobic009G234700 Sobic008G147200 Sobic008G147200 Sobic006G002800--Sobic008G147200 Sobic002G235200--Sobic006G086600 Sobic001G089600 Sobic001G089600 Sobic002G235200--Sobic001G089600 Sobic002G235200--Sobic001G145400 Sobic010G059500 Sobic010G059500 Sobic002G235200--Sobic010G059500 Sobic002G235200--Sobic003G146600 Sobic006G166200 Sobic006G166200 Sobic002G235200--Sobic006G166200 Sobic003G036400 Sobic003G036400 Sobic002G235200--Sobic003G036400 Sobic004G320500 Sobic004G320500 Sobic002G235200--Sobic004G320500 Sobic002G235200--Sobic004G224600 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic006G077200 Sobic006G077200 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic004G340400 Sobic004G340400 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic002G408900 Sobic002G408900 Sobic002G150700--Sobic002G408900 Sobic002G150700--Sobic006G002800 Sobic001G455800 Sobic001G455800 Sobic002G150700--Sobic001G455800 Sobic002G150700--Sobic003G146600 Sobic001G099900 Sobic001G099900 Sobic002G150700--Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic002G150700--Sobic004G208500 Sobic002G398700 Sobic002G398700 Sobic002G150700--Sobic002G398700 Sobic002G150700--Sobic001G145400 Sobic003G304400 Sobic003G304400 Sobic002G150700--Sobic003G304400 Sobic002G042600 Sobic002G042600 Sobic001G065100--Sobic002G042600 Sobic002G179400 Sobic002G179400 Sobic001G065100--Sobic002G179400 Sobic001G263600 Sobic001G263600 Sobic001G065100--Sobic001G263600 Sobic002G401500 Sobic002G401500 Sobic001G065100--Sobic002G401500 Sobic001G493700 Sobic001G493700 Sobic001G065100--Sobic001G493700 Sobic008G088872 Sobic008G088872 Sobic001G065100--Sobic008G088872 Sobic004G322400 Sobic004G322400 Sobic001G065100--Sobic004G322400 Sobic005G062200 Sobic005G062200 Sobic001G065100--Sobic005G062200 Sobic001G065100--Sobic003G296900 Sobic001G255800 Sobic001G255800 Sobic003G039000--Sobic001G255800 Sobic003G039000--Sobic001G065100 Sobic004G131300 Sobic004G131300 Sobic003G039000--Sobic004G131300 Sobic003G039000--Sobic003G146600 Sobic003G375200 Sobic003G375200 Sobic003G039000--Sobic003G375200 Sobic004G223300 Sobic004G223300 Sobic003G039000--Sobic004G223300 Sobic010G080700 Sobic010G080700 Sobic003G039000--Sobic010G080700 Sobic003G039000--Sobic005G062200 Sobic003G039000--Sobic002G179400 Sobic003G012000--Sobic010G059500 Sobic003G012000--Sobic003G308500 Sobic001G393900 Sobic001G393900 Sobic003G012000--Sobic001G393900 Sobic003G012000--Sobic003G146600 Sobic004G096400 Sobic004G096400 Sobic003G012000--Sobic004G096400 Sobic001G405600 Sobic001G405600 Sobic003G012000--Sobic001G405600 Sobic003G043000 Sobic003G043000 Sobic003G012000--Sobic003G043000 Sobic006G234700 Sobic006G234700 Sobic003G012000--Sobic006G234700 Sobic003G256800 Sobic003G256800 Sobic003G012000--Sobic003G256800
Octagon: transcription factors


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